CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39289	Canola	cytosol	96.71	96.26
AT1G65320.1	Thale cress	cytosol	82.86	83.06
Bra004113.1-P	Field mustard	plastid	84.27	82.72
VIT_04s0023g00310.t01	Wine grape	cytosol, plastid, vacuole	64.08	63.93
Solyc04g056630.2.1	Tomato	cytosol	62.21	63.1
KRH40331	Soybean	cytosol, nucleus	62.91	63.06
PGSC0003DMT400027312	Potato	cytosol, mitochondrion, plastid	61.97	62.56
KRH00904	Soybean	cytosol	60.56	60.71
GSMUA_Achr10P...	Banana	cytosol	53.99	60.69
Os01t0920000-01	Rice	cytosol, plasma membrane	52.11	57.81
Zm00001d042343_P001	Maize	extracellular	52.35	54.79
EES04112	Sorghum	cytosol	52.35	54.52
TraesCS3B01G463800.1	Wheat	cytosol	50.47	54.02
GSMUA_Achr7P22870_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	54.46	53.83
TraesCS3D01G422700.1	Wheat	cytosol	50.0	53.52
TraesCS3A01G427100.1	Wheat	cytosol	49.53	53.02
HORVU3Hr1G094090.2	Barley	cytosol	49.53	52.62
GSMUA_AchrUn_...	Banana	cytosol	47.18	45.48
TraesCS3B01G463400.1	Wheat	plastid	44.6	40.77
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	23.71	26.1
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	23.24	25.65
CDY53481	Canola	cytosol	22.54	23.76
CDY28817	Canola	cytosol	20.89	23.18
CDY66674	Canola	cytosol	22.07	22.93
CDX96240	Canola	cytosol	19.72	20.95

Protein Annotations

EnsemblPlants:CDY68980	EnsemblPlantsGene:GSBRNA2T00081956001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF46	PFAM:PF00571	PFscan:PS51371	ProteinID:CDY68980	ProteinID:CDY68980.1	SEG:seg
SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0004EF054B	UniProt:A0A078JRC8	MapMan:35.1	:

Description

BnaA07g38710DBnaA07g38710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRC8]

Coordinates

chrLK038392:-:511..3963

Molecular Weight (calculated)

46059.1 Da

IEP (calculated)

8.264

GRAVY (calculated)

-0.100

Length

426 amino acids

Sequence
(BLAST)

001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR SSAALPPGQQ RFVGILSSLD IVAFLAKSEC LQEDKAMKIP VSQVISPNNT
101: LLKQVDPGTR LIDALEMMKQ GVRRLLVPKS VVWRGMSKRF SILYNGKWLK NSENSSSSSG LSADSNRPAT SKASSRDKFC CLSREDVIRF LIGVLGALAP
201: LPLTSISSLG IINVNYNFIE ASLPAIEATK RPPCDPSAIA VLEQTEHDEK QFKIIGEISA SKLWKCDYLA AAWALANLYA GQFVMGVEDN MSSRSFSDFL
301: QTSFVGGGGG GEQNGTAATK AKKFSSRSIG FNPTSPTRLS IGRSMYRGRS APLTCKTTSS LAAVMAQMLS HRATHVWVTE ADSDDDDILV GVVGYGEILA
401: AVTKQPSAFV PSNRSYEGGF GNEHQS

Best Arabidopsis Sequence Match ( AT1G65320.1 )
(BLAST)

001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR TTPSLPGFVE NSEMRQQRFV GILNSLDIVA FLAKTECLQE EKAMKIPVSE
101: VVSPDNTLLK QVDPGTRLID ALEMMKQGVR RLLVPKSVVW RGMSKRFSIL YNGKWLKNSE NSSSSSGLSA DSTNRPTTSM TSSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISTLGII NQNYNFIEAS LPAIEATRRP LCDPSAIAVL EQTENEQQFK IIGEISASKL WKCDYLAAAW ALANLYAGQF VMGVEDNMSS
301: RSFSDFLQTS FPGGEQNGTA TNAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDVLV GVVGYGEILT
401: AVTKQPSAFV PSNRSYEGFG NENQS

Arabidopsis Description

CBSX6CBS domain-containing protein CBSX6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.