Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27460.1 | CDX70996 | AT5G22310.1 | 21798944 |
| AT4G27460.1 | CDX88802 | AT5G22310.1 | 21798944 |
| AT4G27460.1 | CDX92367 | AT5G22310.1 | 21798944 |
| AT4G27460.1 | CDY67997 | AT5G22310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026347.1-P | Field mustard | cytosol, extracellular, plastid, vacuole | 95.34 | 95.09 |
| CDX89247 | Canola | cytosol, extracellular, plastid, vacuole | 95.34 | 95.09 |
| AT4G27460.1 | Thale cress | plastid | 74.35 | 73.4 |
| CDY53481 | Canola | cytosol | 64.51 | 61.63 |
| CDY66674 | Canola | cytosol | 63.73 | 60.0 |
| CDY28817 | Canola | cytosol | 59.33 | 59.64 |
| CDX96240 | Canola | cytosol | 61.92 | 59.6 |
| KRH22128 | Soybean | plastid | 51.81 | 51.41 |
| KRH27215 | Soybean | cytosol | 51.3 | 50.77 |
| VIT_19s0014g03090.t01 | Wine grape | extracellular, plastid, vacuole | 51.55 | 50.51 |
| PGSC0003DMT400064370 | Potato | cytosol, extracellular, plastid | 49.48 | 48.23 |
| Solyc10g006920.2.1 | Tomato | cytosol, peroxisome, plastid | 48.45 | 47.22 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 44.56 | 44.1 |
| GSMUA_Achr2P18550_001 | Banana | cytosol | 43.52 | 43.08 |
| GSMUA_Achr1P17630_001 | Banana | cytosol | 43.26 | 42.82 |
| GSMUA_Achr3P14310_001 | Banana | cytosol | 41.45 | 42.55 |
| Os10t0499400-01 | Rice | cytosol, endoplasmic reticulum | 30.31 | 41.49 |
| GSMUA_Achr11P... | Banana | cytosol | 40.93 | 40.83 |
| TraesCS1A01G170000.1 | Wheat | plastid | 38.6 | 39.95 |
| TraesCS1B01G187200.1 | Wheat | plastid | 38.34 | 39.68 |
| TraesCS1D01G167600.1 | Wheat | plastid | 38.34 | 39.68 |
| Zm00001d013933_P001 | Maize | cytosol, plastid | 38.34 | 39.57 |
| Zm00001d032560_P001 | Maize | plastid | 37.82 | 38.93 |
| KXG38242 | Sorghum | plastid | 38.08 | 38.58 |
| TraesCS6D01G218300.1 | Wheat | plastid | 35.23 | 35.32 |
| HORVU6Hr1G060370.2 | Barley | plastid | 36.01 | 35.19 |
| TraesCS6B01G264200.1 | Wheat | plastid | 34.72 | 34.54 |
| TraesCS6A01G235600.1 | Wheat | plastid | 34.72 | 34.27 |
| EES05487 | Sorghum | plastid | 35.49 | 33.58 |
| Zm00001d017375_P001 | Maize | plastid | 36.01 | 33.57 |
| TraesCS2A01G586700.1 | Wheat | cytosol, peroxisome, plastid | 32.9 | 33.42 |
| HORVU2Hr1G118660.1 | Barley | cytosol, extracellular, mitochondrion, plastid | 19.43 | 33.33 |
| TraesCSU01G021400.1 | Wheat | cytosol | 32.12 | 32.46 |
| TraesCS2D01G599900.1 | Wheat | cytosol | 31.87 | 32.2 |
| HORVU1Hr1G044960.1 | Barley | mitochondrion, plastid | 37.31 | 29.81 |
| CDY68980 | Canola | cytosol | 25.65 | 23.24 |
| CDY39289 | Canola | cytosol | 25.39 | 22.9 |
| Os04t0679600-01 | Rice | nucleus | 21.5 | 20.54 |
Protein Annotations
| EnsemblPlants:CDY29313 | EnsemblPlantsGene:GSBRNA2T00042284001 | InterPro:CBS_dom | InterPro:IPR000644 | PANTHER:PTHR13780 | PANTHER:PTHR13780:SF55 |
| PFAM:PF00571 | PFscan:PS51371 | ProteinID:CDY29313 | ProteinID:CDY29313.1 | SEG:seg | SUPFAM:SSF54631 |
| UniParc:UPI0004EEEED6 | UniProt:A0A078GXG5 | MapMan:35.1 | : | : | : |
Description
BnaC01g19650DBnaC01g19650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXG5]
Coordinates
chrLK032234:+:502646..504201
Molecular Weight (calculated)
41582.8 Da
IEP (calculated)
4.762
GRAVY (calculated)
0.152
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSLLSYDV TDLCLGKPPL RCLSASSSSV SDAIAALKSS EDPFLSVWDC NHDHDDVAEC ECLGKISMTD VICHLSKDEV HTLSALNSPV SVLLPTTRSL
101: VLHVQPSCSL VEAIDLIIQG AHNLIVPIQT KTTTKKRQQN DNVSHTTTTH SNGQRFCWIT QEDIVRFLLG CIAAFSPLPS MSISDLGIIN SSHAILAVDY
201: NSSASAVVAA ISRALADQTS VAVVDNEGDD SMMYLIGEIS PMTLTCCDET AAAAVATLSA GYLMEYLDGV NPPESLVQEV RDRLESKGQM GLLSLLDSLS
301: LSSSPTSGYS SDEESPARSF GRSMSISTRM ARKAEAVVCN PKSSLMAVMI QAITHRTNYT WVIDKDGCFV GMVTFVDILK VFRKFL
101: VLHVQPSCSL VEAIDLIIQG AHNLIVPIQT KTTTKKRQQN DNVSHTTTTH SNGQRFCWIT QEDIVRFLLG CIAAFSPLPS MSISDLGIIN SSHAILAVDY
201: NSSASAVVAA ISRALADQTS VAVVDNEGDD SMMYLIGEIS PMTLTCCDET AAAAVATLSA GYLMEYLDGV NPPESLVQEV RDRLESKGQM GLLSLLDSLS
301: LSSSPTSGYS SDEESPARSF GRSMSISTRM ARKAEAVVCN PKSSLMAVMI QAITHRTNYT WVIDKDGCFV GMVTFVDILK VFRKFL
001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
Arabidopsis Description
CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.