Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- extracellular 1
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27460.1 | KRH25284 | AT5G22310.1 | 21798944 |
| AT4G27460.1 | KRH30384 | AT5G22310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27215 | Soybean | cytosol | 92.8 | 92.56 |
| PGSC0003DMT400064370 | Potato | cytosol, extracellular, plastid | 64.27 | 63.13 |
| VIT_19s0014g03090.t01 | Wine grape | extracellular, plastid, vacuole | 63.5 | 62.69 |
| Solyc10g006920.2.1 | Tomato | cytosol, peroxisome, plastid | 62.21 | 61.11 |
| CDY29313 | Canola | cytosol, extracellular, plastid, vacuole | 51.41 | 51.81 |
| Bra026347.1-P | Field mustard | cytosol, extracellular, plastid, vacuole | 51.41 | 51.68 |
| CDX89247 | Canola | cytosol, extracellular, plastid, vacuole | 51.41 | 51.68 |
| AT4G27460.1 | Thale cress | plastid | 51.16 | 50.9 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 50.9 | 50.77 |
| CDY53481 | Canola | cytosol | 52.44 | 50.49 |
| KRH10848 | Soybean | cytosol | 48.84 | 49.87 |
| KRH21471 | Soybean | cytosol | 50.64 | 49.5 |
| CDY66674 | Canola | cytosol | 51.93 | 49.27 |
| AT5G53750.1 | Thale cress | cytosol | 51.41 | 49.02 |
| GSMUA_Achr3P14310_001 | Banana | cytosol | 47.3 | 48.94 |
| CDY28817 | Canola | cytosol | 48.07 | 48.7 |
| Bra022672.1-P | Field mustard | cytosol | 46.02 | 48.12 |
| GSMUA_Achr1P17630_001 | Banana | cytosol | 48.07 | 47.95 |
| CDX96240 | Canola | cytosol | 49.1 | 47.63 |
| GSMUA_Achr2P18550_001 | Banana | cytosol | 45.24 | 45.13 |
| GSMUA_Achr11P... | Banana | cytosol | 44.22 | 44.44 |
| Zm00001d032560_P001 | Maize | plastid | 42.42 | 44.0 |
| Os10t0499400-01 | Rice | cytosol, endoplasmic reticulum | 31.88 | 43.97 |
| KXG38242 | Sorghum | plastid | 42.67 | 43.57 |
| TraesCS1D01G167600.1 | Wheat | plastid | 41.65 | 43.43 |
| Zm00001d013933_P001 | Maize | cytosol, plastid | 41.65 | 43.32 |
| TraesCS1B01G187200.1 | Wheat | plastid | 41.39 | 43.16 |
| TraesCS1A01G170000.1 | Wheat | plastid | 41.39 | 43.16 |
| Bra029056.1-P | Field mustard | cytosol | 50.39 | 41.35 |
| TraesCS6D01G218300.1 | Wheat | plastid | 37.79 | 38.18 |
| TraesCS6B01G264200.1 | Wheat | plastid | 37.28 | 37.37 |
| HORVU6Hr1G060370.2 | Barley | plastid | 37.79 | 37.22 |
| TraesCS6A01G235600.1 | Wheat | plastid | 37.02 | 36.83 |
| EES05487 | Sorghum | plastid | 36.76 | 35.05 |
| TraesCSU01G021400.1 | Wheat | cytosol | 33.16 | 33.77 |
| Zm00001d017375_P001 | Maize | plastid | 35.73 | 33.57 |
| TraesCS2A01G586700.1 | Wheat | cytosol, peroxisome, plastid | 32.65 | 33.42 |
| TraesCS2D01G599900.1 | Wheat | cytosol | 32.39 | 32.98 |
| HORVU1Hr1G044960.1 | Barley | mitochondrion, plastid | 40.62 | 32.71 |
| HORVU2Hr1G118660.1 | Barley | cytosol, extracellular, mitochondrion, plastid | 18.25 | 31.56 |
| KRH40331 | Soybean | cytosol, nucleus | 26.99 | 24.71 |
| Os04t0679600-01 | Rice | nucleus | 25.19 | 24.26 |
| KRH00904 | Soybean | cytosol | 26.48 | 24.24 |
Protein Annotations
| EMBL:ACUP02008380 | EnsemblPlants:KRH22128 | EnsemblPlantsGene:GLYMA_13G279100 | EntrezGene:100783195 | InterPro:CBS_dom | InterPro:IPR000644 |
| PANTHER:PTHR13780 | PANTHER:PTHR13780:SF55 | PFAM:PF00571 | PFscan:PS51371 | ProteinID:KRH22128 | ProteinID:KRH22128.1 |
| SEG:seg | SUPFAM:SSF54631 | UniParc:UPI000233B959 | UniProt:I1M3B0 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr13:-:38013681..38016023
Molecular Weight (calculated)
42160.8 Da
IEP (calculated)
6.101
GRAVY (calculated)
0.152
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSFLARDV SDLCLGKPPL RSLSAAATVA DALAALKSSD HETHVSLWSF CENKNEVRCV GKLCMVDVIC YLCREDNLLS PSKALKEPLS SILPKDQSLV
101: VHLQPSSSLF EAIDLILQGA QNLVVPILPT KRSGVSRRKQ QQHQKASSTI NSHSSCEFCW LTQEDVIRFL LGSIGVFTPL PALSIDSLGI ISSDVLAIDY
201: YSPASSAVGA ISKSLTQQTS VAIVDSDGTF IGEISPFTLA CCDETVAAAI ATLSAGDLMA YIDCGGPPED LVRLVKARLK EKNFEKMLQE FTILSSCESS
301: QSTSSDEELP TRTPARSGRL ARSSSYSARM VRKAEAIVCH PKSSLVAVMI QAIAHRVNYL WVIEDDCSLV GIVTFSNMLK VFREHLETI
101: VHLQPSSSLF EAIDLILQGA QNLVVPILPT KRSGVSRRKQ QQHQKASSTI NSHSSCEFCW LTQEDVIRFL LGSIGVFTPL PALSIDSLGI ISSDVLAIDY
201: YSPASSAVGA ISKSLTQQTS VAIVDSDGTF IGEISPFTLA CCDETVAAAI ATLSAGDLMA YIDCGGPPED LVRLVKARLK EKNFEKMLQE FTILSSCESS
301: QSTSSDEELP TRTPARSGRL ARSSSYSARM VRKAEAIVCH PKSSLVAVMI QAIAHRVNYL WVIEDDCSLV GIVTFSNMLK VFREHLETI
001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M
Arabidopsis Description
CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.