CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40331	Soybean	cytosol, nucleus	86.59	86.59
VIT_04s0023g00310.t01	Wine grape	cytosol, plastid, vacuole	67.06	66.74
Solyc04g056630.2.1	Tomato	cytosol	64.47	65.24
AT1G65320.1	Thale cress	cytosol	64.24	64.24
PGSC0003DMT400027312	Potato	cytosol, mitochondrion, plastid	63.53	63.98
CDY39289	Canola	cytosol	61.18	60.75
Bra004113.1-P	Field mustard	plastid	61.88	60.6
CDY68980	Canola	cytosol	60.71	60.56
GSMUA_Achr10P...	Banana	cytosol	53.88	60.42
TraesCS3D01G422700.1	Wheat	cytosol	51.29	54.77
TraesCS3B01G463800.1	Wheat	cytosol	51.29	54.77
Os01t0920000-01	Rice	cytosol, plasma membrane	49.41	54.69
TraesCS3A01G427100.1	Wheat	cytosol	50.59	54.02
HORVU3Hr1G094090.2	Barley	cytosol	50.35	53.37
Zm00001d042343_P001	Maize	extracellular	50.35	52.58
EES04112	Sorghum	cytosol	50.59	52.57
GSMUA_Achr7P22870_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	52.71	51.97
GSMUA_AchrUn_...	Banana	cytosol	44.71	42.99
TraesCS3B01G463400.1	Wheat	plastid	46.12	42.06
KRH22128	Soybean	plastid	24.24	26.48
KRH27215	Soybean	cytosol	23.53	25.64
KRH21471	Soybean	cytosol	22.59	24.12
KRH10848	Soybean	cytosol	21.18	23.62

Protein Annotations

EMBL:ACUP02011481	EnsemblPlants:KRH00904	EnsemblPlantsGene:GLYMA_18G240900	EntrezGene:100784349	Gene3D:3.10.580.10	InterPro:CBS_dom
InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF46	PFAM:PF00571	PFscan:PS51371	ProteinID:KRH00904
ProteinID:KRH00904.1	SEG:seg	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI000233E587	UniProt:I1N3Y0
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:52946564..52950484

Molecular Weight (calculated)

46161.1 Da

IEP (calculated)

7.054

GRAVY (calculated)

-0.078

Length

425 amino acids

Sequence
(BLAST)

001: MASVFVYHVV GDLTVGKPEL AEFHESETVE SAIRAIGESP EGSIPIWKKR SQLGIENSDM RQQRFVGILS SFDIVAFLAK SRCLEDQDKA LKTPVSEVVV
101: HNNSLLRVVD PATRLIDALD MMKQGVKRLL VPKSIAWKGM SKRFSVIYYG KWLKNSESPG NSSNNLPLSM NRSPSTSVTP IPDKYCCLSR EDVLRFIIGC
201: LGALAPLPLT SIAALEAINS NYNYIESSTP AIEATQKLPQ DPSAVAVIES ASDGQCKIIG EISACKLWKC DYLSAAWALA NLSAGQFVMG VEDNVTPRSL
301: PEFSLDSPSG DIDLVNSGGS RKPRKFSSRS VGFFSNSASH NFSSRSMYRG RSAPLTCKIT SSLAAVLAQM LSHRATHVWV TEDENDEVLV GVVGYADILA
401: AVTKPPTTFI PANRSTEGFG NEIQC

Best Arabidopsis Sequence Match ( AT1G65320.1 )
(BLAST)

001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR TTPSLPGFVE NSEMRQQRFV GILNSLDIVA FLAKTECLQE EKAMKIPVSE
101: VVSPDNTLLK QVDPGTRLID ALEMMKQGVR RLLVPKSVVW RGMSKRFSIL YNGKWLKNSE NSSSSSGLSA DSTNRPTTSM TSSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISTLGII NQNYNFIEAS LPAIEATRRP LCDPSAIAVL EQTENEQQFK IIGEISASKL WKCDYLAAAW ALANLYAGQF VMGVEDNMSS
301: RSFSDFLQTS FPGGEQNGTA TNAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDVLV GVVGYGEILT
401: AVTKQPSAFV PSNRSYEGFG NENQS

Arabidopsis Description

CBSX6CBS domain-containing protein CBSX6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.