CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00904	Soybean	cytosol	86.59	86.59
VIT_04s0023g00310.t01	Wine grape	cytosol, plastid, vacuole	72.94	72.6
AT1G65320.1	Thale cress	cytosol	64.24	64.24
PGSC0003DMT400027312	Potato	cytosol, mitochondrion, plastid	63.29	63.74
Solyc04g056630.2.1	Tomato	cytosol	62.82	63.57
CDY39289	Canola	cytosol	63.53	63.08
CDY68980	Canola	cytosol	63.06	62.91
Bra004113.1-P	Field mustard	plastid	64.24	62.9
GSMUA_Achr10P...	Banana	cytosol	53.65	60.16
Os01t0920000-01	Rice	cytosol, plasma membrane	51.06	56.51
TraesCS3B01G463800.1	Wheat	cytosol	50.59	54.02
TraesCS3D01G422700.1	Wheat	cytosol	50.35	53.77
GSMUA_Achr7P22870_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	54.35	53.6
Zm00001d042343_P001	Maize	extracellular	51.29	53.56
EES04112	Sorghum	cytosol	51.29	53.3
TraesCS3A01G427100.1	Wheat	cytosol	49.65	53.02
HORVU3Hr1G094090.2	Barley	cytosol	49.65	52.62
GSMUA_AchrUn_...	Banana	cytosol	46.35	44.57
TraesCS3B01G463400.1	Wheat	plastid	45.65	41.63
KRH22128	Soybean	plastid	24.71	26.99
KRH27215	Soybean	cytosol	23.76	25.9
KRH10848	Soybean	cytosol	22.12	24.67
KRH21471	Soybean	cytosol	23.06	24.62

Protein Annotations

EMBL:ACUP02006035	EnsemblPlants:KRH40331	EnsemblPlantsGene:GLYMA_09G251700	EntrezGene:100788752	Gene3D:3.10.580.10	InterPro:CBS_dom
InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF46	PFAM:PF00571	PFscan:PS51371	ProteinID:KRH40331
ProteinID:KRH40331.1	SEG:seg	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI00023388F4	UniProt:I1L6B9
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:47216219..47219993

Molecular Weight (calculated)

46174.2 Da

IEP (calculated)

7.673

GRAVY (calculated)

-0.082

Length

425 amino acids

Sequence
(BLAST)

001: MASVFVYHVV GDLTVGKPEL AEFHESETVE SAIRAIGECH EGTIPIWKKR SQLGIENSDM RQQRFVGILS SFDIVAFLAK SQCLEDQDKA LKTPVSEVVV
101: HNNSLLRVVD PATRLIDALD MMKQGVKRLL VPKSVAWKGM SKRFSVIYYG KWLKNSESPG NSSNNLPLNM NRSPSTSITP IRDRYCCLSR EDVLRFIIGC
201: LGALAPLPLT SIASLGAINS NYNYIESSTP AIEATQKLPQ DPSAVAVIES TSDGQCKIIG EISACKLWKC DYLSAAWALA NLSAGQFVMG VEDNVTPRSL
301: PQFSLDLASG ENDLANGGGS RKPRKFSSRS VGFFSNTASH SFGSRSMYRG RSAPLTCKIT SSLAAVLAQM LSHRATHVWV TEDENDEVLV GVVGYADILA
401: AVTKPPTAFI PANRSTEGFG NEIQC

Best Arabidopsis Sequence Match ( AT1G65320.1 )
(BLAST)

001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR TTPSLPGFVE NSEMRQQRFV GILNSLDIVA FLAKTECLQE EKAMKIPVSE
101: VVSPDNTLLK QVDPGTRLID ALEMMKQGVR RLLVPKSVVW RGMSKRFSIL YNGKWLKNSE NSSSSSGLSA DSTNRPTTSM TSSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISTLGII NQNYNFIEAS LPAIEATRRP LCDPSAIAVL EQTENEQQFK IIGEISASKL WKCDYLAAAW ALANLYAGQF VMGVEDNMSS
301: RSFSDFLQTS FPGGEQNGTA TNAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDVLV GVVGYGEILT
401: AVTKQPSAFV PSNRSYEGFG NENQS

Arabidopsis Description

CBSX6CBS domain-containing protein CBSX6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.