Factsheet for Solyc04g056630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027312	Potato	cytosol, mitochondrion, plastid	88.81	88.39
VIT_04s0023g00310.t01	Wine grape	cytosol, plastid, vacuole	67.86	66.74
AT1G65320.1	Thale cress	cytosol	66.9	66.12
KRH00904	Soybean	cytosol	65.24	64.47
KRH40331	Soybean	cytosol, nucleus	63.57	62.82
GSMUA_Achr10P...	Banana	cytosol	56.43	62.53
CDY68980	Canola	cytosol	63.1	62.21
CDY39289	Canola	cytosol	63.33	62.15
Bra004113.1-P	Field mustard	plastid	63.57	61.52
Os01t0920000-01	Rice	cytosol, plasma membrane	51.19	55.99
GSMUA_Achr7P22870_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	55.95	54.52
EES04112	Sorghum	cytosol	52.38	53.79
TraesCS3B01G463800.1	Wheat	cytosol	50.95	53.77
TraesCS3D01G422700.1	Wheat	cytosol	50.95	53.77
TraesCS3A01G427100.1	Wheat	cytosol	50.24	53.02
HORVU3Hr1G094090.2	Barley	cytosol	50.24	52.62
Zm00001d042343_P001	Maize	extracellular	50.71	52.33
GSMUA_AchrUn_...	Banana	cytosol	46.9	44.57
TraesCS3B01G463400.1	Wheat	plastid	45.95	41.42
Solyc03g006470.2.1	Tomato	cytosol	26.9	28.25
Solyc02g078480.2.1	Tomato	cytosol	26.67	27.65
Solyc10g009010.2.1	Tomato	cytosol	24.29	25.95
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	23.33	24.75

Protein Annotations

EnsemblPlants:Solyc04g056630.2.1	EnsemblPlantsGene:Solyc04g056630.2	Gene3D:3.10.580.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR13780	PANTHER:PTHR13780:SF46	PFAM:PF00571	PFscan:PS51371	SEG:seg	SMART:SM00116
SUPFAM:SSF54631	UniParc:UPI0002765E69	UniProt:K4BSW1	MapMan:35.1	:	:

Description

CBS domain-containing protein CBSX6 [Source:Projected from Arabidopsis thaliana (AT1G65320) UniProtKB/Swiss-Prot;Acc:Q8GZA4]

Coordinates

chr4:-:54608238..54614589

Molecular Weight (calculated)

45700.1 Da

IEP (calculated)

7.934

GRAVY (calculated)

-0.026

Length

420 amino acids

Sequence
(BLAST)

001: MASVFLYHVV GDLTVGKPEL VEFTETQTVE AAIKAIGEST ECGIPVWKTR SQKGMIENAE MRRKRFVGIL NSLDIVAFLA REECLADQEK AMKTPVSEVV
101: LPDNSLLKEL DPATRLIDAL EMMKQGVKRL LVPKSVVWRG MSKRFSILYN GKWLKNIDTS NPAANANRPS TSSPVPIRDK FCCLSREDII RFIIGCLGAL
201: APIPLSSIYS LGIINPNYCS IEASRPAIDA TQKLPSDPPA VAVIDPMADD YNKIIGEISA TKLWKCDYLA AAWALANFSA GQFVMGVEDN ISPSSLPDFP
301: VNSMVTNANT ANSRGSIVRP KKFSSRSIGF VSNPTNSSLS VSRSMYRGRS APLTCKETSS LAAVMAQMLS HRATHVWVTD ADNDDHLVGV VGYADILAAV
401: TRPLPTTNPE SHSCSSMLIN

Best Arabidopsis Sequence Match ( AT1G65320.1 )
(BLAST)

001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR TTPSLPGFVE NSEMRQQRFV GILNSLDIVA FLAKTECLQE EKAMKIPVSE
101: VVSPDNTLLK QVDPGTRLID ALEMMKQGVR RLLVPKSVVW RGMSKRFSIL YNGKWLKNSE NSSSSSGLSA DSTNRPTTSM TSSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISTLGII NQNYNFIEAS LPAIEATRRP LCDPSAIAVL EQTENEQQFK IIGEISASKL WKCDYLAAAW ALANLYAGQF VMGVEDNMSS
301: RSFSDFLQTS FPGGEQNGTA TNAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDVLV GVVGYGEILT
401: AVTKQPSAFV PSNRSYEGFG NENQS

Arabidopsis Description

CBSX6CBS domain-containing protein CBSX6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.