CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68980	Canola	cytosol	96.26	96.71
AT1G65320.1	Thale cress	cytosol	82.24	82.82
Bra004113.1-P	Field mustard	plastid	82.94	81.8
VIT_04s0023g00310.t01	Wine grape	cytosol, plastid, vacuole	64.49	64.64
KRH40331	Soybean	cytosol, nucleus	63.08	63.53
Solyc04g056630.2.1	Tomato	cytosol	62.15	63.33
PGSC0003DMT400027312	Potato	cytosol, mitochondrion, plastid	61.92	62.8
KRH00904	Soybean	cytosol	60.75	61.18
GSMUA_Achr10P...	Banana	cytosol	53.74	60.69
Os01t0920000-01	Rice	cytosol, plasma membrane	51.4	57.29
Zm00001d042343_P001	Maize	extracellular	51.4	54.05
EES04112	Sorghum	cytosol	51.64	54.03
GSMUA_Achr7P22870_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	54.21	53.83
TraesCS3B01G463800.1	Wheat	cytosol	49.77	53.52
TraesCS3D01G422700.1	Wheat	cytosol	49.53	53.27
TraesCS3A01G427100.1	Wheat	cytosol	49.07	52.76
HORVU3Hr1G094090.2	Barley	cytosol	48.83	52.12
GSMUA_AchrUn_...	Banana	cytosol	46.73	45.25
TraesCS3B01G463400.1	Wheat	plastid	43.93	40.34
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	23.36	25.84
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	22.9	25.39
CDY53481	Canola	cytosol	22.43	23.76
CDY28817	Canola	cytosol	20.79	23.18
CDY66674	Canola	cytosol	21.96	22.93
CDX96240	Canola	cytosol	19.63	20.95

Protein Annotations

EnsemblPlants:CDY39289	EnsemblPlantsGene:GSBRNA2T00067527001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF46	PFAM:PF00571	PFscan:PS51371	ProteinID:CDY39289	ProteinID:CDY39289.1	SEG:seg
SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0004EEA3DD	UniProt:A0A078HPF4	MapMan:35.1	:

Description

BnaC06g27020DBnaC06g27020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPF4]

Coordinates

chrLK032444:+:257547..260875

Molecular Weight (calculated)

46144.1 Da

IEP (calculated)

8.546

GRAVY (calculated)

-0.111

Length

428 amino acids

Sequence
(BLAST)

001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR SSAALPPGQQ RFVGILSSLD IVAFLAKSEC LQEDKAMKIP VSQVITPNNT
101: LLKQVDPGTR LIDALEMMKQ GVRRLLVPKS VVWRGMSKRF SILYNGKWLK NSENSSSSSG LSADSNRPAT SKASSRDKFC CLSREDVIRF LIGVLGALAP
201: LPLTSISSLG IINVNYNFIE ASVPAIEATK RPPYDPSAIA VLEQSENNEK QFKIIGEISA SKLWKCDYLA AAWALANLYA GQFVMGVEDN MSSRSFSDFL
301: QTSFVGGGGG GGGDQNGTAA TKAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDDDI LVGVVGYGEI
401: LAAVTKQPSA FVPSNRSYEG GFGNENQS

Best Arabidopsis Sequence Match ( AT1G65320.1 )
(BLAST)

001: MASVFLYHVV GDLTVGKPEM VEFYETETVE SAIRAIGEST ECGIPVWRKR TTPSLPGFVE NSEMRQQRFV GILNSLDIVA FLAKTECLQE EKAMKIPVSE
101: VVSPDNTLLK QVDPGTRLID ALEMMKQGVR RLLVPKSVVW RGMSKRFSIL YNGKWLKNSE NSSSSSGLSA DSTNRPTTSM TSSRDKFCCL SREDVIRFLI
201: GVLGALAPLP LTSISTLGII NQNYNFIEAS LPAIEATRRP LCDPSAIAVL EQTENEQQFK IIGEISASKL WKCDYLAAAW ALANLYAGQF VMGVEDNMSS
301: RSFSDFLQTS FPGGEQNGTA TNAKKFSSRS IGFNPTSPTR LSIGRSMYRG RSAPLTCKTS SSLAAVMAQM LSHRATHVWV TEADSDDVLV GVVGYGEILT
401: AVTKQPSAFV PSNRSYEGFG NENQS

Arabidopsis Description

CBSX6CBS domain-containing protein CBSX6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.