Factsheet for VIT_19s0014g03090.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
nucleus 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	VIT_06s0080g00930.t01	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22128	Soybean	plastid	62.69	63.5
KRH27215	Soybean	cytosol	62.69	63.33
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	63.45	63.13
VIT_00s0587g00030.t01	Wine grape	cytosol	58.88	60.42
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	60.66	60.35
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	50.51	51.55
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	50.25	51.16
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	50.25	51.16
GSMUA_AchrUn_...	Banana	cytosol, plastid	50.25	50.77
AT4G27460.1	Thale cress	plastid	50.0	50.38
AT5G53750.1	Thale cress	cytosol	50.51	48.77
GSMUA_Achr3P14310_001	Banana	cytosol	46.45	48.67
CDY66674	Canola	cytosol	50.0	48.05
GSMUA_Achr1P17630_001	Banana	cytosol	47.21	47.69
GSMUA_Achr2P18550_001	Banana	cytosol	46.7	47.18
CDY53481	Canola	cytosol	48.22	47.03
CDY28817	Canola	cytosol	44.92	46.09
Bra022672.1-P	Field mustard	cytosol	43.15	45.7
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	32.49	45.39
Zm00001d032560_P001	Maize	plastid	42.89	45.07
CDX96240	Canola	cytosol	45.69	44.89
TraesCS1D01G167600.1	Wheat	plastid	42.39	44.77
TraesCS1A01G170000.1	Wheat	plastid	42.39	44.77
GSMUA_Achr11P...	Banana	cytosol	43.91	44.7
KXG38242	Sorghum	plastid	43.15	44.62
TraesCS1B01G187200.1	Wheat	plastid	42.13	44.5
Zm00001d013933_P001	Maize	cytosol, plastid	41.62	43.85
Bra029056.1-P	Field mustard	cytosol	48.22	40.08
TraesCS6D01G218300.1	Wheat	plastid	37.31	38.18
HORVU6Hr1G060370.2	Barley	plastid	37.56	37.47
TraesCS6B01G264200.1	Wheat	plastid	36.55	37.11
TraesCS6A01G235600.1	Wheat	plastid	36.8	37.08
EES05487	Sorghum	plastid	38.07	36.76
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	34.52	35.79
TraesCS2D01G599900.1	Wheat	cytosol	34.52	35.6
Zm00001d017375_P001	Maize	plastid	37.31	35.51
TraesCSU01G021400.1	Wheat	cytosol	33.5	34.55
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	41.12	33.54
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	17.77	31.11
Os04t0679600-01	Rice	nucleus	24.62	24.01
VIT_04s0023g00310.t01	Wine grape	cytosol, plastid, vacuole	23.86	22.01

Protein Annotations

EntrezGene:100267418	wikigene:100267418	MapMan:35.1	ProteinID:CBI20333	ProteinID:CBI20333.3	InterPro:CBS_dom
UniProt:E0CSN4	EMBL:FN595229	InterPro:IPR000644	EntrezGene:LOC100267418	wikigene:LOC100267418	PFscan:PS51371
PANTHER:PTHR13780	PANTHER:PTHR13780:SF55	SUPFAM:SSF54631	TIGR:TC56013	TIGR:TC57630	UniParc:UPI0001985714
ArrayExpress:VIT_19s0014g03090	EnsemblPlantsGene:VIT_19s0014g03090	EnsemblPlants:VIT_19s0014g03090.t01	unigene:Vvi.17361	RefSeq:XP_002284800	RefSeq:XP_002284800.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:-:3265347..3267246

Molecular Weight (calculated)

42537.2 Da

IEP (calculated)

5.394

GRAVY (calculated)

0.156

Length

394 amino acids

Sequence
(BLAST)

001: MAFSLLAHVV SDLCLGKPAL RSLSISATVG EALSALKTSE DSFISVWSCD HSANIQDECR CVGKICMVDV VCYLCKDDNL LSPSSALKSP VSDLLPNIPG
101: LVMHVEPHSS LLEAIDLILQ GAQNLVVPIR SSISNSSRRK LYQKPQTSPT TMHKGCEYCW LTQEDVVRYL LSSIGLLSPI AALPIDTLRI IDTDVLAINY
201: HSPASSSLPA ILRSLRDQTS VAVVDENGAL IGEISPFTLA CCDETVAAAI TTLSSGDLMS YIDCGGPPEE IVKTVKTRLK QRNLEGMLEE FALDSSSTSS
301: LSASSSDEES SPSPKTALYR PGKYSRSSSY SARMVRRAEA IVCHPGSSLV AVMIQAIAHR VNYVWVIEDD CCLAGIVTFS SMLKIFREHL QSMA

Best Arabidopsis Sequence Match ( AT4G27460.1 )
(BLAST)

001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M

Arabidopsis Description

CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.