Factsheet for GSMUA_Achr3P14310_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	GSMUA_Achr6P08260_001	AT5G22310.1	21798944
AT4G27460.1	GSMUA_Achr6P16290_001	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, plastid	71.01	68.46
GSMUA_Achr1P17630_001	Banana	cytosol	70.48	67.95
GSMUA_Achr2P18550_001	Banana	cytosol	54.52	52.56
GSMUA_Achr11P...	Banana	cytosol	51.6	50.13
KRH27215	Soybean	cytosol	49.2	47.44
KRH22128	Soybean	plastid	48.94	47.3
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	48.67	46.45
VIT_00s0587g00030.t01	Wine grape	cytosol	47.34	46.35
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	45.48	43.18
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	43.35	42.89
Solyc02g078480.2.1	Tomato	cytosol	45.48	42.22
PGSC0003DMT400057642	Potato	cytosol	45.21	42.18
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	43.09	41.86
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	43.09	41.86
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	43.88	41.67
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	42.55	41.45
AT4G27460.1	Thale cress	plastid	43.09	41.43
TraesCS2D01G599900.1	Wheat	cytosol	41.76	41.1
CDY53481	Canola	cytosol	43.88	40.84
TraesCSU01G021400.1	Wheat	cytosol	41.49	40.84
KRH21471	Soybean	cytosol	43.09	40.7
KRH10848	Soybean	cytosol	41.22	40.68
CDY28817	Canola	cytosol	41.49	40.62
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	24.2	40.44
CDY66674	Canola	cytosol	43.88	40.24
PGSC0003DMT400058761	Potato	mitochondrion	42.02	40.2
AT5G53750.1	Thale cress	cytosol	42.82	39.46
CDX96240	Canola	cytosol	42.02	39.4
Solyc10g009010.2.1	Tomato	cytosol	39.89	38.17
PGSC0003DMT400033347	Potato	cytosol	40.16	37.84
Bra022672.1-P	Field mustard	cytosol	36.97	37.37
Solyc03g006470.2.1	Tomato	cytosol	38.83	36.5
Bra029056.1-P	Field mustard	cytosol	41.22	32.7
Os04t0679600-01	Rice	nucleus	29.52	27.48
GSMUA_Achr10P...	Banana	cytosol	24.73	24.54
GSMUA_AchrUn_...	Banana	cytosol	25.8	21.95
GSMUA_Achr7P22870_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	23.4	20.42

Protein Annotations

EnsemblPlants:GSMUA_Achr3P14310_001	EnsemblPlants:GSMUA_Achr3T14310_001	EnsemblPlantsGene:GSMUA_Achr3G14310_001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR13780	PANTHER:PTHR13780:SF55	PFAM:PF00571	PFscan:PS51371	SEG:seg	SUPFAM:SSF54631
UniParc:UPI000296CD63	UniProt:M0SEJ8	MapMan:35.1	:	:	:

Description

cystathionin beta synthase protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G14310_001]

Coordinates

chr3:-:13469367..13470815

Molecular Weight (calculated)

39894.1 Da

IEP (calculated)

4.753

GRAVY (calculated)

0.312

Length

376 amino acids

Sequence
(BLAST)

001: MTVNSLQTRE VSDLCIGKPA TRPLSLSATV GDALLALRSG GSDDRLVIWT ADGPAPERKA CAGNVCLVDV LCYLCAEQNL DAPMAALGAP ASALLPPLTA
101: ASLVRRVEPS CSILEALDAI LDGAQSLVVP IRAAASPRKF TSGSAAELCW LTREDFVRFF LNSIALFSPV PALSVTDLGL VRPAALAVRP QDPALSALPL
201: IRAALAEQTS VAVVSDDGRL IGEISPFTLA HCDERVAPAL AALSAGDLMT FVDCVGAPRK SAMRSIRAQL RAKGLLGMLE LLDADVSPPF SPSTSSVTRS
301: AWRSGSYSAR MGRRSEEAIV CHPWSSLVAV MIQALAHRVS YVWVVDDDDY YLDGIVTFSD ILEVFREQLE QTGTCI

Best Arabidopsis Sequence Match ( AT4G27460.1 )
(BLAST)

001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M

Arabidopsis Description

CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.