Factsheet for PGSC0003DMT400033347

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g006470.2.1	Tomato	cytosol	85.21	85.0
PGSC0003DMT400057642	Potato	cytosol	67.42	66.75
PGSC0003DMT400058761	Potato	mitochondrion	61.65	62.6
VIT_00s0587g00030.t01	Wine grape	cytosol	56.39	58.59
KRH21471	Soybean	cytosol	50.13	50.25
KRH10848	Soybean	cytosol	45.86	48.03
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	45.61	45.96
GSMUA_AchrUn_...	Banana	cytosol, plastid	44.36	45.38
GSMUA_Achr2P18550_001	Banana	cytosol	42.11	43.08
GSMUA_Achr1P17630_001	Banana	cytosol	41.35	42.31
Zm00001d032560_P001	Maize	plastid	39.1	41.6
KXG38242	Sorghum	plastid	39.1	40.94
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	28.82	40.78
TraesCS1A01G170000.1	Wheat	plastid	38.1	40.75
GSMUA_Achr11P...	Banana	cytosol	39.35	40.57
TraesCS1B01G187200.1	Wheat	plastid	37.84	40.48
TraesCS1D01G167600.1	Wheat	plastid	37.84	40.48
GSMUA_Achr3P14310_001	Banana	cytosol	37.84	40.16
Zm00001d013933_P001	Maize	cytosol, plastid	37.34	39.84
TraesCS6D01G218300.1	Wheat	plastid	33.58	34.81
HORVU6Hr1G060370.2	Barley	plastid	33.83	34.18
EES05487	Sorghum	plastid	34.84	34.07
TraesCS6B01G264200.1	Wheat	plastid	33.08	34.02
TraesCS6A01G235600.1	Wheat	plastid	33.33	34.02
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	31.58	33.16
TraesCSU01G021400.1	Wheat	cytosol	31.58	32.98
TraesCS2D01G599900.1	Wheat	cytosol	30.58	31.94
Zm00001d017375_P001	Maize	plastid	33.08	31.88
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	17.79	31.56
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	37.09	30.64
PGSC0003DMT400027312	Potato	cytosol, mitochondrion, plastid	27.07	25.59
Os04t0679600-01	Rice	nucleus	22.06	21.78

Protein Annotations

EnsemblPlants:PGSC0003DMT400033347	EnsemblPlantsGene:PGSC0003DMG400012809	EntrezGene:102602454	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF55	PFAM:PF00571	PFscan:PS51371	PGSC:PGSC0003DMG400012809	RefSeq:XP_006343242.1	SEG:seg
SUPFAM:SSF54631	UniParc:UPI0002960A57	UniProt:M1AYZ9	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012809]

Coordinates

chr3:-:1956252..1957922

Molecular Weight (calculated)

43244.2 Da

IEP (calculated)

4.871

GRAVY (calculated)

-0.091

Length

399 amino acids

Sequence
(BLAST)

001: MAVRFLNRDV SDLCLGKPAL RSIPENATVA EALMLLKRSG ETHVSVWNCD HSSSFLEKAK ADDDDGCHCV GKISMVDVIC FLSKQENLID SSKAFEVPIS
101: KLLPKGDSIV RHLDPNSSLL EAIDYMIEGT QNAVIPIYNY ASTDSRKKSS SPRSTHHNGV EYCWLTQEDV ARFLLNSIGV FSPMPTFSIE SLNIIDHNIM
201: TVGYHDPAIS ALDSIKLANI EQTALAVVDN DNKLIGEISA STLAYCDEDV AAAITTLSAG DLMAYIDYGG PPEDLVGLVK MRLQEKKLGV MTKLMEEEFS
301: VSSSSSSACS CSSDDESGSS RNGSGRYSSS RRSEAITCYP GSSLAAVLIQ ALAHRASSVW VIDEDHNLVG AVSFKGILKV FRSIANARLK PETENLSTQ

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.