Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000402_P001 | |
| Zm00001d003996_P001 | |
| Zm00001d025208_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27460.1 | Zm00001d000402_P001 | AT5G22310.1 | 21798944 |
| AT4G27460.1 | Zm00001d003996_P001 | AT5G22310.1 | 21798944 |
| AT4G27460.1 | Zm00001d025208_P002 | AT5G22310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032560_P001 | Maize | plastid | 88.5 | 88.27 |
| TraesCS1B01G187200.1 | Wheat | plastid | 77.81 | 78.02 |
| TraesCS1A01G170000.1 | Wheat | plastid | 77.81 | 78.02 |
| TraesCS1D01G167600.1 | Wheat | plastid | 77.54 | 77.75 |
| Os10t0499400-01 | Rice | cytosol, endoplasmic reticulum | 55.62 | 73.76 |
| HORVU1Hr1G044960.1 | Barley | mitochondrion, plastid | 75.67 | 58.59 |
| GSMUA_Achr2P18550_001 | Banana | cytosol | 55.08 | 52.82 |
| GSMUA_Achr11P... | Banana | cytosol | 54.28 | 52.45 |
| KRH27215 | Soybean | cytosol | 44.38 | 42.56 |
| VIT_00s0587g00030.t01 | Wine grape | cytosol | 43.05 | 41.93 |
| KRH22128 | Soybean | plastid | 43.32 | 41.65 |
| VIT_19s0014g03090.t01 | Wine grape | extracellular, plastid, vacuole | 43.85 | 41.62 |
| PGSC0003DMT400064370 | Potato | cytosol, extracellular, plastid | 43.85 | 41.41 |
| Zm00001d017375_P001 | Maize | plastid | 45.45 | 41.06 |
| Solyc10g006920.2.1 | Tomato | cytosol, peroxisome, plastid | 43.05 | 40.66 |
| CDX89247 | Canola | cytosol, extracellular, plastid, vacuole | 39.84 | 38.5 |
| Bra026347.1-P | Field mustard | cytosol, extracellular, plastid, vacuole | 39.84 | 38.5 |
| PGSC0003DMT400058761 | Potato | mitochondrion | 40.37 | 38.42 |
| CDY29313 | Canola | cytosol, extracellular, plastid, vacuole | 39.57 | 38.34 |
| AT4G27460.1 | Thale cress | plastid | 39.84 | 38.11 |
| CDY66674 | Canola | cytosol | 41.71 | 38.05 |
| Solyc02g078480.2.1 | Tomato | cytosol | 40.91 | 37.78 |
| PGSC0003DMT400057642 | Potato | cytosol | 40.64 | 37.72 |
| PGSC0003DMT400033347 | Potato | cytosol | 39.84 | 37.34 |
| KRH21471 | Soybean | cytosol | 39.57 | 37.19 |
| Solyc10g009010.2.1 | Tomato | cytosol | 39.04 | 37.15 |
| CDY53481 | Canola | cytosol | 40.11 | 37.13 |
| KRH10848 | Soybean | cytosol | 37.7 | 37.01 |
| AT5G53750.1 | Thale cress | cytosol | 39.84 | 36.52 |
| CDY28817 | Canola | cytosol | 36.63 | 35.68 |
| CDX96240 | Canola | cytosol | 37.97 | 35.41 |
| Solyc03g006470.2.1 | Tomato | cytosol | 37.7 | 35.25 |
| Bra022672.1-P | Field mustard | cytosol | 33.16 | 33.33 |
| Bra029056.1-P | Field mustard | cytosol | 38.24 | 30.17 |
| Zm00001d031600_P001 | Maize | plastid | 22.19 | 21.01 |
| Zm00001d042343_P001 | Maize | extracellular | 20.32 | 18.67 |
Protein Annotations
| EMBL:BT042095 | EnsemblPlants:Zm00001d013933_P001 | EnsemblPlants:Zm00001d013933_T001 | EnsemblPlantsGene:Zm00001d013933 | EntrezGene:100273954 | InterPro:CBS_dom |
| InterPro:IPR000644 | PANTHER:PTHR13780 | PANTHER:PTHR13780:SF55 | PFAM:PF00571 | PFscan:PS51371 | ProteinID:AQK64825.1 |
| ProteinID:AQK64828.1 | SEG:seg | SUPFAM:SSF54631 | UniParc:UPI00017B7934 | UniProt:B4FYA7 | MapMan:35.1 |
Description
CBS domain-containing protein CBSX5
Coordinates
chr5:-:25177803..25179923
Molecular Weight (calculated)
38967.9 Da
IEP (calculated)
5.254
GRAVY (calculated)
0.368
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVNFLANEL SDLCIGKPAV RSLPLSAATG DLAAALRRVS RSGAAACVAV TGPARAVVGR VGPADVLCLL CTDPEALARP AAVFSKPVSA LLPKDGAGEV
101: RRVDPRSSIL EALDAILSGA QVLAVPLRAG GRKKQLVGAA DGDFCWLTQE DLVRYFLNYI CLVYNVAARS VSSLGLVRAD FLSVRPGEAA LSAVPLIRRA
201: VATETAVAVV AEDGHLVGEI SPALLAACDE TAAAAIATLS AADLMAYIDH YVSPPEHILR AVKAGLKDKG LDALLALVED ETLSSFSSLS SASSSSDEEA
301: GRAQLRRPSS GSYGRRAADE PVVCSPASSL VAVLVQALAH RVSYVWVLDE DNDCRLAGIV TFADVLRVFR EQLL
101: RRVDPRSSIL EALDAILSGA QVLAVPLRAG GRKKQLVGAA DGDFCWLTQE DLVRYFLNYI CLVYNVAARS VSSLGLVRAD FLSVRPGEAA LSAVPLIRRA
201: VATETAVAVV AEDGHLVGEI SPALLAACDE TAAAAIATLS AADLMAYIDH YVSPPEHILR AVKAGLKDKG LDALLALVED ETLSSFSSLS SASSSSDEEA
301: GRAQLRRPSS GSYGRRAADE PVVCSPASSL VAVLVQALAH RVSYVWVLDE DNDCRLAGIV TFADVLRVFR EQLL
001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN
Arabidopsis Description
CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.