Factsheet for PGSC0003DMT400064370

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015076
PGSC0003DMT400067737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	PGSC0003DMT400015076	AT5G22310.1	21798944
AT4G27460.1	PGSC0003DMT400067737	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	92.68	92.68
KRH22128	Soybean	plastid	63.13	64.27
KRH27215	Soybean	cytosol	62.63	63.59
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	63.13	63.45
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	48.23	49.48
AT4G27460.1	Thale cress	plastid	48.74	49.36
GSMUA_AchrUn_...	Banana	cytosol, plastid	48.48	49.23
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	47.98	49.1
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	47.98	49.1
PGSC0003DMT400057642	Potato	cytosol	48.99	48.14
CDY53481	Canola	cytosol	48.74	47.77
CDY28817	Canola	cytosol	45.96	47.4
CDY66674	Canola	cytosol	48.99	47.32
Bra022672.1-P	Field mustard	cytosol	43.94	46.77
CDX96240	Canola	cytosol	47.22	46.63
AT5G53750.1	Thale cress	cytosol	47.98	46.57
PGSC0003DMT400058761	Potato	mitochondrion	46.21	46.56
GSMUA_Achr1P17630_001	Banana	cytosol	45.2	45.9
PGSC0003DMT400033347	Potato	cytosol	45.96	45.61
GSMUA_Achr3P14310_001	Banana	cytosol	43.18	45.48
Zm00001d032560_P001	Maize	plastid	42.93	45.33
KXG38242	Sorghum	plastid	43.43	45.14
GSMUA_Achr11P...	Banana	cytosol	43.94	44.96
TraesCS1D01G167600.1	Wheat	plastid	41.41	43.97
Zm00001d013933_P001	Maize	cytosol, plastid	41.41	43.85
GSMUA_Achr2P18550_001	Banana	cytosol	43.18	43.85
TraesCS1A01G170000.1	Wheat	plastid	41.16	43.7
TraesCS1B01G187200.1	Wheat	plastid	41.16	43.7
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	30.56	42.91
Bra029056.1-P	Field mustard	cytosol	45.96	38.4
TraesCS6D01G218300.1	Wheat	plastid	33.84	34.81
TraesCS2D01G599900.1	Wheat	cytosol	33.33	34.55
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	33.08	34.47
HORVU6Hr1G060370.2	Barley	plastid	34.34	34.43
TraesCS6B01G264200.1	Wheat	plastid	33.33	34.02
TraesCS6A01G235600.1	Wheat	plastid	33.59	34.02
EES05487	Sorghum	plastid	34.85	33.82
TraesCSU01G021400.1	Wheat	cytosol	32.32	33.51
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	40.66	33.33
Zm00001d017375_P001	Maize	plastid	32.83	31.4
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	16.41	28.89
PGSC0003DMT400027312	Potato	cytosol, mitochondrion, plastid	23.99	22.51
Os04t0679600-01	Rice	nucleus	21.72	21.29

Protein Annotations

EnsemblPlants:PGSC0003DMT400064370	EnsemblPlantsGene:PGSC0003DMG400025008	EntrezGene:102594632	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF55	PFAM:PF00571	PFscan:PS51371	PGSC:PGSC0003DMG400025008	RefSeq:XP_006362950.1	SEG:seg
SUPFAM:SSF54631	UniParc:UPI0002951101	UniProt:M1CC89	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025008]

Coordinates

chr10:+:1859476..1862422

Molecular Weight (calculated)

42873.6 Da

IEP (calculated)

4.671

GRAVY (calculated)

0.220

Length

396 amino acids

Sequence
(BLAST)

001: MAAHLLAHEV ADLCLGKPPL RSLSVSATIG EALASLKSCE ENCISVWDCD HFKNVDCICV GKVCMVDIIC FLCKKENVNS PSLALKSPVT ALLPKDSVLV
101: RHVQPSTSLL EAIDLILQGA QNLVVPIETR FSGSSRRKLL QKSSSTRGCT LHNGREFCWL TQEDVIRYFL SSIGLFSPLP TASIDALGII STEFLSIGYH
201: SSASLATEAI SRSLVDQTSV AIVDEDGVLI GEISPFTLAC CGETVAAAIT TLTAGELLAY IDCGGPPEDI VRVVKERLKE RNLEGMLEEF EIDPSDISSN
301: SLLSDEELPS PTSSRSSGGR YNKSSSYSAR MVRRAEAIVC YPGSSLVAVM VQAIAHRVNY VWVIEEDCSV VGIVTFANML EVFRDQLEAM MLGHFD

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.