CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES11990
KXG30263

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	EES11990	AT5G22310.1	21798944
AT4G27460.1	KXG30263	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032560_P001	Maize	plastid	93.18	94.67
TraesCS1B01G187200.1	Wheat	plastid	78.48	80.16
TraesCS1A01G170000.1	Wheat	plastid	78.48	80.16
TraesCS1D01G167600.1	Wheat	plastid	78.22	79.89
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	57.74	78.01
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	76.12	60.04
GSMUA_Achr2P18550_001	Banana	cytosol	55.64	54.36
GSMUA_Achr11P...	Banana	cytosol	52.76	51.94
EES05487	Sorghum	plastid	47.51	44.36
VIT_00s0587g00030.t01	Wine grape	cytosol	44.09	43.75
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	45.14	43.43
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	44.62	43.15
KRH27215	Soybean	cytosol	43.83	42.82
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	44.36	42.68
KRH22128	Soybean	plastid	43.57	42.67
Solyc02g078480.2.1	Tomato	cytosol	42.26	39.75
PGSC0003DMT400057642	Potato	cytosol	41.73	39.45
PGSC0003DMT400033347	Potato	cytosol	40.94	39.1
PGSC0003DMT400058761	Potato	mitochondrion	39.9	38.68
AT4G27460.1	Thale cress	plastid	39.63	38.62
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	39.11	38.5
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	39.11	38.5
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	38.58	38.08
CDY66674	Canola	cytosol	40.94	38.05
CDY53481	Canola	cytosol	39.9	37.62
KRH21471	Soybean	cytosol	39.11	37.44
Solyc10g009010.2.1	Tomato	cytosol	38.58	37.4
KRH10848	Soybean	cytosol	37.01	37.01
Solyc03g006470.2.1	Tomato	cytosol	38.85	37.0
AT5G53750.1	Thale cress	cytosol	39.37	36.76
CDY28817	Canola	cytosol	36.22	35.94
CDX96240	Canola	cytosol	37.8	35.91
Bra022672.1-P	Field mustard	cytosol	33.07	33.87
Bra029056.1-P	Field mustard	cytosol	37.53	30.17
EES14199	Sorghum	plastid	22.05	21.16
EES04112	Sorghum	cytosol	21.26	19.8

Protein Annotations

EnsemblPlants:KXG38242	EnsemblPlantsGene:SORBI_3001G204900	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780	PANTHER:PTHR13780:SF55
PFAM:PF00571	PFscan:PS51371	ProteinID:KXG38242	ProteinID:KXG38242.1	SEG:seg	SUPFAM:SSF54631
UniParc:UPI0003E7258C	UniProt:A0A1B6QJY9	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:18702177..18704575

Molecular Weight (calculated)

39273.1 Da

IEP (calculated)

5.475

GRAVY (calculated)

0.343

Length

381 amino acids

Sequence
(BLAST)

001: MAVSFLANEV SDLCIGKPAV RSLPLSAAAG DLAAALRRVA RSGAAACVAV TGPARAVVGR VGLADVLCFL CTDPEALARP AAVFSKPVSA LLPKDGAGEV
101: RRVDPRSSIL EALDAVLSGA QVLAVPLRAG GRRKQLVGGG GGGGGGGAAA GDFCWLTQED LVRYFLNSIG LFYHVAARSV SSLGLVRTDY LSVRPGESAL
201: SAVPLIRRAV ATETAVAVVT EDGHLVGEIS PALLAACDET AAAAIATLSA ADLMAYVDYF GSPPEHILRA VKAGLKDKGL DAMLALIEDE TLSSFSSASS
301: SSDEEAAGRA QLRRPSSGSY GRRSAEEPVV CSPASSLVAV MVQALAHRVS YVWVLDEDND CRLAGIVTFA DVLRVFREQL L

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.