Factsheet for PGSC0003DMT400058761

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g009010.2.1	Tomato	cytosol	81.93	81.93
PGSC0003DMT400057642	Potato	cytosol	65.39	63.77
PGSC0003DMT400033347	Potato	cytosol	62.6	61.65
VIT_00s0587g00030.t01	Wine grape	cytosol	53.94	55.21
KRH21471	Soybean	cytosol	48.09	47.49
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	46.56	46.21
KRH10848	Soybean	cytosol	44.53	45.93
GSMUA_AchrUn_...	Banana	cytosol, plastid	44.02	44.36
Os10t0499400-01	Rice	cytosol, endoplasmic reticulum	31.3	43.62
GSMUA_Achr2P18550_001	Banana	cytosol	43.26	43.59
GSMUA_Achr3P14310_001	Banana	cytosol	40.2	42.02
GSMUA_Achr11P...	Banana	cytosol	41.22	41.86
GSMUA_Achr1P17630_001	Banana	cytosol	41.48	41.79
TraesCS1D01G167600.1	Wheat	plastid	38.68	40.75
TraesCS1A01G170000.1	Wheat	plastid	38.68	40.75
Zm00001d032560_P001	Maize	plastid	38.68	40.53
TraesCS1B01G187200.1	Wheat	plastid	38.42	40.48
Zm00001d013933_P001	Maize	cytosol, plastid	38.42	40.37
KXG38242	Sorghum	plastid	38.68	39.9
TraesCS6D01G218300.1	Wheat	plastid	33.59	34.29
TraesCS6B01G264200.1	Wheat	plastid	33.33	33.76
HORVU6Hr1G060370.2	Barley	plastid	33.84	33.67
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	31.81	32.89
TraesCS6A01G235600.1	Wheat	plastid	32.57	32.74
EES05487	Sorghum	plastid	33.84	32.6
TraesCS2D01G599900.1	Wheat	cytosol	31.3	32.2
TraesCSU01G021400.1	Wheat	cytosol	31.3	32.2
Zm00001d017375_P001	Maize	plastid	33.84	32.13
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	17.56	30.67
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	37.4	30.43
PGSC0003DMT400027312	Potato	cytosol, mitochondrion, plastid	26.97	25.12
Os04t0679600-01	Rice	nucleus	22.14	21.53

Protein Annotations

EnsemblPlants:PGSC0003DMT400058761	EnsemblPlantsGene:PGSC0003DMG400022829	EntrezGene:107063340	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF55	PFscan:PS51371	PGSC:PGSC0003DMG400022829	RefSeq:XP_015170569.1	SEG:seg	SUPFAM:SSF54631
UniParc:UPI000294A911	UniProt:M1C396	MapMan:35.1	:	:	:

Description

CBS [Source:PGSC_GENE;Acc:PGSC0003DMG400022829]

Coordinates

chr10:+:4607671..4611463

Molecular Weight (calculated)

42686.3 Da

IEP (calculated)

5.118

GRAVY (calculated)

0.130

Length

393 amino acids

Sequence
(BLAST)

001: MAVRTFLNRN VSDLCVGKPA LKPLSAAATV SEALALLNKS SEPHVSVWSC DHSKNVVEDE CEYRCVGKIC MVDVICFLCK NENSDNPSKA LETSVSQILP
101: KGNLIVRHLA PNSSLLEAID YILEGTQNLV IPVQNYIGGK SRKTQSKSSS LSCKHRDGVE YCWLTQEDVV RFLLNFIGVF SPITISSIES LNIIDCNVMT
201: IRYHEPAMSA LDSLTLAHVE QTSVAVVDDL DRLIGEISPS TLAYCYETAA AAVMTLSAGD LLAYIDCGGP PEDLVDLVKV ILQEKKLGAL LELMDEELSL
301: SSSSSCSVSS CSFDDELGVC RNNGSGRYSS ARRAEAITCY SNSSLVAVMI QALAHRASSV WVMHEDNTLI GCVTFKGILK VFRSLANARP ITR

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.