Factsheet for HORVU2Hr1G118660.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion, plastid
Any Predictor:	extracellular, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G069400.8

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	HORVU2Hr1G069400.8	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G599900.1	Wheat	cytosol	59.56	35.08
TraesCSU01G021400.1	Wheat	cytosol	59.11	34.82
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	54.67	32.37
GSMUA_AchrUn_...	Banana	cytosol, plastid	42.67	24.62
GSMUA_Achr3P14310_001	Banana	cytosol	40.44	24.2
GSMUA_Achr1P17630_001	Banana	cytosol	40.44	23.33
HORVU6Hr1G060370.2	Barley	plastid	40.44	23.04
Os04t0679600-01	Rice	nucleus	40.44	22.52
CDY53481	Canola	cytosol	36.0	20.05
CDY28817	Canola	cytosol	33.78	19.79
CDY66674	Canola	cytosol	36.0	19.76
AT4G27460.1	Thale cress	plastid	34.22	19.69
AT5G53750.1	Thale cress	cytosol	35.56	19.61
CDX96240	Canola	cytosol	34.67	19.45
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	33.33	19.43
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	32.89	19.12
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	32.89	19.12
KRH27215	Soybean	cytosol	32.44	18.72
KRH22128	Soybean	plastid	31.56	18.25
Solyc10g009010.2.1	Tomato	cytosol	31.56	18.07
PGSC0003DMT400033347	Potato	cytosol	31.56	17.79
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	31.11	17.77
PGSC0003DMT400057642	Potato	cytosol	31.56	17.62
PGSC0003DMT400058761	Potato	mitochondrion	30.67	17.56
Solyc02g078480.2.1	Tomato	cytosol	31.56	17.53
Solyc03g006470.2.1	Tomato	cytosol	31.11	17.5
Bra022672.1-P	Field mustard	cytosol	28.89	17.47
HORVU1Hr1G044960.1	Barley	mitochondrion, plastid	37.33	17.39
KRH21471	Soybean	cytosol	30.67	17.34
VIT_00s0587g00030.t01	Wine grape	cytosol	29.33	17.19
KRH10848	Soybean	cytosol	28.89	17.06
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	29.33	16.67
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	28.89	16.41
Bra029056.1-P	Field mustard	cytosol	32.89	15.61
HORVU7Hr1G053840.1	Barley	golgi	20.89	13.09
HORVU3Hr1G094090.2	Barley	cytosol	23.11	12.97

Protein Annotations

EnsemblPlants:HORVU2Hr1G118660.1	EnsemblPlantsGene:HORVU2Hr1G118660	Gene3D:3.10.580.10	PANTHER:PTHR13780	PANTHER:PTHR13780:SF39	SEG:seg
SUPFAM:SSF54631	UniParc:UPI000B460BD9	UniProt:A0A287JME1	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrchr2H:+:743083617..743084427

Molecular Weight (calculated)

23964.6 Da

IEP (calculated)

8.162

GRAVY (calculated)

0.079

Length

225 amino acids

Sequence
(BLAST)

001: RFFLGSVALF SQIALRSVSD LGAVRPARSA LAVAPGDDAL SAIMPLLRTA LATHASVALV SCRCLVGEIS PSTLCSLDAS VAALSTGFLV SFVHTSRTPH
101: SAALRLRNLL HPMSPSSSSP SSSSASCSSS EDEDEERNGT PACRSQGGEH GSSYSARWTK GREPIACRRR SSLVAVMAQA VAHRVMQVWV LDDEPKEEEL
201: VGVVSFLDVL RVLRRHLLRA HSMAD

Best Arabidopsis Sequence Match ( AT5G53750.1 )
(BLAST)

001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN

Arabidopsis Description

CBS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JXB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.