Factsheet for TraesCS2D01G599900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G282200.1
TraesCS2B01G299400.1
TraesCS2D01G281000.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27460.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT4G27460.1	TraesCS7D01G134000.1	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G021400.1	Wheat	cytosol	80.37	80.37
TraesCS2A01G586700.1	Wheat	cytosol, peroxisome, plastid	77.49	77.89
HORVU2Hr1G118660.1	Barley	cytosol, extracellular, mitochondrion, plastid	35.08	59.56
GSMUA_AchrUn_...	Banana	cytosol, plastid	43.19	42.31
GSMUA_Achr3P14310_001	Banana	cytosol	41.1	41.76
GSMUA_Achr1P17630_001	Banana	cytosol	41.88	41.03
TraesCS1D01G167600.1	Wheat	plastid	36.39	37.27
TraesCS6D01G218300.1	Wheat	plastid	35.86	35.58
VIT_19s0014g03090.t01	Wine grape	extracellular, plastid, vacuole	35.6	34.52
KRH27215	Soybean	cytosol	34.29	33.59
PGSC0003DMT400064370	Potato	cytosol, extracellular, plastid	34.55	33.33
VIT_00s0587g00030.t01	Wine grape	cytosol	33.25	33.07
Solyc10g006920.2.1	Tomato	cytosol, peroxisome, plastid	33.77	32.58
AT4G27460.1	Thale cress	plastid	33.25	32.48
KRH22128	Soybean	plastid	32.98	32.39
CDY53481	Canola	cytosol	33.77	31.93
CDY29313	Canola	cytosol, extracellular, plastid, vacuole	32.2	31.87
CDY28817	Canola	cytosol	31.94	31.77
CDY66674	Canola	cytosol	34.03	31.71
Bra026347.1-P	Field mustard	cytosol, extracellular, plastid, vacuole	31.94	31.52
CDX89247	Canola	cytosol, extracellular, plastid, vacuole	31.94	31.52
PGSC0003DMT400058761	Potato	mitochondrion	32.2	31.3
Solyc10g009010.2.1	Tomato	cytosol	32.2	31.3
CDX96240	Canola	cytosol	32.72	31.17
KRH21471	Soybean	cytosol	32.46	31.16
PGSC0003DMT400057642	Potato	cytosol	32.72	31.02
KRH10848	Soybean	cytosol	30.89	30.97
Solyc02g078480.2.1	Tomato	cytosol	32.72	30.86
PGSC0003DMT400033347	Potato	cytosol	31.94	30.58
AT5G53750.1	Thale cress	cytosol	32.2	30.15
Bra022672.1-P	Field mustard	cytosol	29.06	29.84
Solyc03g006470.2.1	Tomato	cytosol	30.89	29.5
Os04t0679600-01	Rice	nucleus	30.89	29.21
Bra029056.1-P	Field mustard	cytosol	32.98	26.58
TraesCS7D01G259800.1	Wheat	plastid	23.56	22.33
TraesCS3D01G422700.1	Wheat	cytosol	22.25	21.36

Protein Annotations

EnsemblPlants:TraesCS2D01G599900.1	EnsemblPlantsGene:TraesCS2D01G599900	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR13780
PANTHER:PTHR13780:SF39	PFAM:PF00571	PFscan:PS51371	SEG:seg	SUPFAM:SSF54631	MapMan:35.1

Description

No Description!

Coordinates

chr2D:+:650927517..650928977

Molecular Weight (calculated)

39761.3 Da

IEP (calculated)

4.680

GRAVY (calculated)

0.165

Length

382 amino acids

Sequence
(BLAST)

001: MVAGFLLESE VSDLCIGKPP IRWLPPSSTV ASAVDELEAD GGPCGAVAVW DGEAGAAVAG RVRMADVLFF LCADEGNNLQ ATLADLLAAA GAPPVRRVEP
101: DASVLEAVDA LLGGAQSLVV PIRDNRRPET AQLEAESMCW VTVEDVARFF LGSVALFSQI ALRSVSDLGA VRPARSVLAV APGDDTLSAT EPLLRAALAT
201: HASVAVVSGR CLVGEISPLT LCSSLDAPMS LIDSARAPRE AALGPRLRSR NLHGVLDLLN AGGRDLPSPS SSSSSSSSCA SSSSSSSDGE DEDEKNVTSA
301: FTSTSQQARF SARWRKGIIA CRRGSSLVAV MAQAVAHRVT QVWVLDDGPE GEELVGVVGL LDVLRVLRRH LLRAPPAHTM AE

Best Arabidopsis Sequence Match ( AT4G27460.1 )
(BLAST)

001: MALSLLSYNV SDLCLGKPPL RCLSSSSSSV SDAIAALKSS EDTFLSVWNC NHDDDNNTEC ECLGKISMAD VICHLSKDHD HSLCALNSSV SVLLPKTRSI
101: VLHVQPSCSL IEAIDLIIKG AQNLIVPIHT KPYTKKKQHN DNVSVTTTTH SNGQRFCWIT QEDIIQFLLG FIAAFSPLPA MSLSDLGVIN STHTVVAVDY
201: HSSASAVVSA VSNALAVQTS VAVVDGEGDD PFTSLIGEIS PMTLTCCDET AAAAVATLSA GDLMAYIDGA NPPESLVQIV RNRLEDKGLI GLMSLFDSLS
301: SYSTSSGYSS EEEAPVRTTS YGRSMSSSAR MARKSEAIVC NPKSSLMAVM IQAVAHRVNY AWVVEKDGCF VGMVTFVDIL KVFRKFLEND M

Arabidopsis Description

CBSX5CBSX5 [Source:UniProtKB/TrEMBL;Acc:A0A178V3C0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.