Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G281000.1 | Wheat | nucleus, plastid | 94.79 | 93.29 |
| TraesCS2A01G282200.1 | Wheat | nucleus | 92.64 | 91.17 |
| HORVU2Hr1G069400.8 | Barley | nucleus | 80.61 | 88.21 |
| EES11990 | Sorghum | nucleus | 65.71 | 64.44 |
| Os04t0382800-00 | Rice | nucleus | 65.17 | 63.57 |
| Zm00001d003996_P001 | Maize | nucleus | 63.2 | 61.86 |
| Zm00001d025208_P002 | Maize | nucleus | 64.81 | 61.6 |
| TraesCS7B01G035800.1 | Wheat | nucleus | 43.99 | 42.39 |
| CDX70996 | Canola | nucleus | 23.52 | 27.58 |
| CDX88802 | Canola | nucleus | 23.16 | 27.56 |
| Bra006620.1-P | Field mustard | nucleus | 22.26 | 27.49 |
| VIT_06s0080g00930.t01 | Wine grape | plastid | 31.96 | 27.3 |
| Bra001412.1-P | Field mustard | nucleus | 16.7 | 26.8 |
| Bra002404.1-P | Field mustard | nucleus | 22.98 | 26.45 |
| GSMUA_Achr6P16290_001 | Banana | nucleus | 29.26 | 26.42 |
| CDX92367 | Canola | mitochondrion, plastid | 22.62 | 26.25 |
| CDY67997 | Canola | mitochondrion, plastid | 22.08 | 26.11 |
| CDY01038 | Canola | plastid | 28.01 | 25.57 |
| Solyc11g068720.1.1 | Tomato | nucleus | 29.08 | 25.55 |
| AT3G11590.1 | Thale cress | plastid | 28.37 | 25.4 |
| PGSC0003DMT400067737 | Potato | nucleus | 26.03 | 25.39 |
| Bra034827.1-P | Field mustard | plastid | 27.83 | 25.24 |
| CDY08511 | Canola | plastid | 27.83 | 25.2 |
| AT5G22310.1 | Thale cress | nucleus | 21.72 | 25.16 |
| Solyc06g074190.2.1 | Tomato | nucleus | 24.24 | 24.91 |
| VIT_08s0007g02790.t01 | Wine grape | plastid | 28.9 | 24.47 |
| CDX73866 | Canola | cytosol | 15.98 | 24.12 |
| CDY56601 | Canola | cytosol, golgi, plastid | 15.98 | 24.12 |
| Solyc10g083190.1.1 | Tomato | plastid | 28.55 | 24.05 |
| PGSC0003DMT400072353 | Potato | plastid | 28.19 | 23.97 |
| KRG96225 | Soybean | nucleus | 28.01 | 23.82 |
| KRH67971 | Soybean | plastid | 28.01 | 23.64 |
| PGSC0003DMT400015076 | Potato | nucleus | 24.06 | 23.55 |
| KRH25284 | Soybean | plastid | 27.83 | 23.52 |
| KRH30384 | Soybean | plastid | 27.29 | 22.96 |
| GSMUA_Achr6P08260_001 | Banana | nucleus | 21.9 | 21.29 |
| TraesCS2B01G286200.1 | Wheat | plastid | 20.65 | 18.76 |
| TraesCS1B01G329400.1 | Wheat | plastid | 21.01 | 17.81 |
| TraesCS2B01G492000.1 | Wheat | plastid | 21.36 | 17.37 |
| TraesCS7B01G197400.1 | Wheat | plastid | 18.31 | 15.84 |
| TraesCS7B01G238900.1 | Wheat | nucleus | 19.93 | 14.8 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G299400.1 | EnsemblPlantsGene:TraesCS2B01G299400 | ncoils:Coil | PANTHER:PTHR31071 | PANTHER:PTHR31071:SF18 | SEG:seg |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:419625827..419628790
Molecular Weight (calculated)
62142.8 Da
IEP (calculated)
7.852
GRAVY (calculated)
-0.895
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGRGGEEGA AVRLARIRKR RALSSSDSSN AARRLRSRRP AVLLIRRRRE GGAAMSDSSS RSRHCRRHVA DGASARRLVT AFWQSDKDRL FGEEHHALVM
101: DKDAAARRSL VPKSNASTEA SKSSRSRTKI KMFEEAGGRK GSCHNGHGQW PSADVMSNCS AMEIGTHPQD DEEKAIQLKD LYNSLIASKE LAKVLAHIWG
201: EVNPSTVSLV SALRSELDLA RAHVRRLIKE QKSERGEIDG LKKELVEEME AWKAKQKEKA ATALQYIVTE LDKEKKSRRR AERAKEKLGA ALADAESSLR
301: AANKELERER KSRGRVEKMC GELVRGIGED RAEVEALKRE AEDAQRELEK EREMLHLADE WREQRVQMKL LEARLQFEEK NSALNQLHDE LQAYLLDAKK
401: GQEPATTDQM RSTHASENGG AASGPVPAPD NAGDGGFSED CDSEGSDMHS IELNVDGNGN LHTWSYTPSS RRDRRVGAST RMDDAGSRCG VDRKTFRETD
501: DALEGDWAEG CSNGMLNFDH DEERYQAIKD LREQMLAGSG LLMSQGRETA QSHYCIL
101: DKDAAARRSL VPKSNASTEA SKSSRSRTKI KMFEEAGGRK GSCHNGHGQW PSADVMSNCS AMEIGTHPQD DEEKAIQLKD LYNSLIASKE LAKVLAHIWG
201: EVNPSTVSLV SALRSELDLA RAHVRRLIKE QKSERGEIDG LKKELVEEME AWKAKQKEKA ATALQYIVTE LDKEKKSRRR AERAKEKLGA ALADAESSLR
301: AANKELERER KSRGRVEKMC GELVRGIGED RAEVEALKRE AEDAQRELEK EREMLHLADE WREQRVQMKL LEARLQFEEK NSALNQLHDE LQAYLLDAKK
401: GQEPATTDQM RSTHASENGG AASGPVPAPD NAGDGGFSED CDSEGSDMHS IELNVDGNGN LHTWSYTPSS RRDRRVGAST RMDDAGSRCG VDRKTFRETD
501: DALEGDWAEG CSNGMLNFDH DEERYQAIKD LREQMLAGSG LLMSQGRETA QSHYCIL
001: MERSGTGSRQ RRASSTVQKL RLGDCNVGAR DPINSGSFMD IETRSRVETP TGSTVGVKTR LKDCSNALTT SKELLKIINR MWGQDDRPSS SMSLVSALHS
101: ELERARLQVN QLIHEHKPEN NDISYLMKRF AEEKAVWKSN EQEVVEAAIE SVAGELEVER KLRRRFESLN KKLGKELAET KSALMKAVKE IENEKRARVM
201: VEKVCDELAR DISEDKAEVE ELKRESFKVK EEVEKEREML QLADALREER VQMKLSEAKH QLEEKNAAVD KLRNQLQTYL KAKRCKEKTR EPPQTQLHNE
301: EAGDYLNHHI SFGSYNIEDG EVENGNEEGS GESDLHSIEL NIDNKSYKWP YGEENRGRKS TPRKSLSLQR SISDCVDWVV QSEKLQKSGD GGLDWGRSID
401: VEPKGYIDET QAYKPNKASS KDHHILSGSR LSNFRGGSVS KSRLSDASKG ENQNARKSRW
101: ELERARLQVN QLIHEHKPEN NDISYLMKRF AEEKAVWKSN EQEVVEAAIE SVAGELEVER KLRRRFESLN KKLGKELAET KSALMKAVKE IENEKRARVM
201: VEKVCDELAR DISEDKAEVE ELKRESFKVK EEVEKEREML QLADALREER VQMKLSEAKH QLEEKNAAVD KLRNQLQTYL KAKRCKEKTR EPPQTQLHNE
301: EAGDYLNHHI SFGSYNIEDG EVENGNEEGS GESDLHSIEL NIDNKSYKWP YGEENRGRKS TPRKSLSLQR SISDCVDWVV QSEKLQKSGD GGLDWGRSID
401: VEPKGYIDET QAYKPNKASS KDHHILSGSR LSNFRGGSVS KSRLSDASKG ENQNARKSRW
Arabidopsis Description
At3g11590/F24K9_26 [Source:UniProtKB/TrEMBL;Acc:Q9CAW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.