Factsheet for TraesCS1B01G284200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3B01G567600.1
TraesCS3D01G511300.1
TraesCS4A01G352200.1
TraesCS5B01G519400.1
TraesCS5D01G518700.2
TraesCS6A01G313600.1
TraesCS6B01G343700.1
TraesCS6D01G293000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	TraesCS3B01G567600.1	AT4G33940.1	21798944
AT5G09800.1	TraesCS3D01G511300.1	AT4G33940.1	21798944
AT5G09800.1	TraesCS4A01G352200.1	AT4G33940.1	21798944
AT5G09800.1	TraesCS5B01G519400.1	AT4G33940.1	21798944
AT5G09800.1	TraesCS5D01G518700.2	AT4G33940.1	21798944
AT5G09800.1	TraesCS6A01G313600.1	AT4G33945.1	21798944
AT5G09800.1	TraesCS6B01G343700.1	AT4G33945.1	21798944
AT5G09800.1	TraesCS6D01G293000.1	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G274600.1	Wheat	mitochondrion	98.23	98.23
TraesCS1A01G274800.1	Wheat	mitochondrion	98.23	98.23
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	95.36	95.36
Os05t0439400-01	Rice	plasma membrane	86.75	86.95
KXG22102	Sorghum	mitochondrion	85.43	84.68
Zm00001d038280_P001	Maize	cytosol	84.33	84.51
GSMUA_Achr5P01020_001	Banana	cytosol	38.19	43.14
TraesCS2B01G315100.1	Wheat	cytosol	33.77	34.69
VIT_04s0044g00870.t01	Wine grape	cytosol	28.26	31.07
VIT_18s0166g00190.t01	Wine grape	plasma membrane	27.37	31.0
KRH70331	Soybean	mitochondrion	27.15	30.22
KRH08734	Soybean	mitochondrion	27.37	29.95
KRH53869	Soybean	cytosol	26.93	29.26
PGSC0003DMT400002079	Potato	cytosol	26.71	28.95
Solyc04g071030.1.1	Tomato	cytosol	26.49	28.1
Solyc11g005700.1.1	Tomato	cytosol	26.05	28.1
CDX92262	Canola	cytosol	25.61	28.09
PGSC0003DMT400065698	Potato	cytosol	25.83	27.86
CDY71041	Canola	cytosol	25.39	27.84
AT3G18710.1	Thale cress	cytosol	25.39	27.71
CDX75980	Canola	cytosol	25.83	27.59
Bra037568.1-P	Field mustard	cytosol	24.94	27.36
Bra022347.1-P	Field mustard	cytosol	25.61	27.36
KRH59546	Soybean	cytosol	25.17	27.27
CDX82332	Canola	cytosol	25.39	27.12
Bra001717.1-P	Field mustard	cytosol	25.39	27.12
KRH43397	Soybean	cytosol	24.94	27.03
CDX99325	Canola	cytosol	25.17	26.95
CDX84538	Canola	cytosol	24.72	26.73
CDY08864	Canola	cytosol	24.5	26.49
Bra024318.1-P	Field mustard	cytosol	24.5	26.49
KRH36899	Soybean	cytosol	21.63	26.42
AT5G09800.1	Thale cress	cytosol	23.4	25.92
TraesCS6B01G268300.1	Wheat	extracellular	22.96	25.55
AT5G64660.1	Thale cress	cytosol	23.62	25.48
TraesCS3B01G409400.1	Wheat	cytosol	22.74	24.7
TraesCS7B01G300000.1	Wheat	cytosol, extracellular, nucleus	20.09	23.7
TraesCS2B01G323600.1	Wheat	cytosol	20.75	23.5
TraesCS4B01G228700.1	Wheat	mitochondrion	22.74	23.41
TraesCS6B01G342800.1	Wheat	mitochondrion	23.18	23.13
TraesCS6B01G290700.1	Wheat	cytosol	21.85	22.97
TraesCS2B01G601300.1	Wheat	cytosol	21.63	22.95
TraesCS6B01G209000.1	Wheat	cytosol	21.41	22.93
TraesCS2B01G471900.1	Wheat	cytosol	20.97	22.73
TraesCS7B01G105600.1	Wheat	mitochondrion	22.08	22.42
TraesCS6B01G420600.1	Wheat	cytosol	20.53	22.14
TraesCS6B01G421400.1	Wheat	cytosol	20.53	22.14
TraesCS6B01G421900.1	Wheat	cytosol	20.09	21.67
TraesCS4B01G236200.1	Wheat	cytosol	20.53	20.26
TraesCS2B01G314500.1	Wheat	cytosol	19.21	20.19

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR003613	InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF21
SMART:SM00504	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS1B01G284200	EnsemblPlants:TraesCS1B01G284200.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:493315253..493316614

Molecular Weight (calculated)

46847.4 Da

IEP (calculated)

9.541

GRAVY (calculated)

0.247

Length

453 amino acids

Sequence
(BLAST)

001: MDALVAGQQA RRRIRPPEPL VMAASPTTPA AFKCPISLEV MRSPVSLPTG ATYDRASIQR WLDSGHRTCP ATRLPLASTD LVPNLLLRRL IHLHAATLPP
101: SPSPEEALSQ LAASHGEPAA AEKAVRSLAA KIAPEKGKQA SVASAVAADL DSTVPALLSF AKGGAGTNAR VDAVRILATV APEMVPYLTR DGTEKRGRVK
201: MAVEAMAAVL SAGGVSEDAR KALITALVAA DLGRVVATLL SAGPTGVVVL EAILTSPVPD ADVKTAIADR SELFPDLVRI LKEAASPAAI LCMAAAVQVR
301: GRPARASMVR AGAVPALALA VAAAPTAAAE SALMLLVEAA RCSDGKAVIA DDAAEVAAAV MGRMIRVGQM GREAAVALLW LSCCARGGDR KMREALAAAP
401: EAVGKLLVVM QGDCSPATSR MAGELLRAVR MEQERKGMVS SSYDSRTIHV MPY

Best Arabidopsis Sequence Match ( AT3G18710.1 )
(BLAST)

001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF

Arabidopsis Description

PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.