Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G420600.1 | Wheat | cytosol | 94.29 | 94.29 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 93.81 | 93.81 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 93.57 | 93.13 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 92.86 | 92.2 |
| HORVU6Hr1G089560.1 | Barley | plastid | 93.33 | 86.92 |
| HORVU6Hr1G089590.1 | Barley | plastid | 93.33 | 86.73 |
| OQU85086 | Sorghum | cytosol | 74.52 | 73.3 |
| EES06927 | Sorghum | cytosol | 73.57 | 72.88 |
| Os02t0539200-01 | Rice | cytosol | 75.0 | 71.27 |
| Zm00001d016730_P001 | Maize | cytosol | 71.43 | 68.81 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 62.62 | 61.02 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 38.57 | 52.26 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 43.1 | 50.99 |
| Solyc01g007030.2.1 | Tomato | cytosol | 24.29 | 48.34 |
| PGSC0003DMT400055045 | Potato | cytosol | 24.29 | 48.34 |
| CDY32070 | Canola | cytosol | 46.67 | 47.57 |
| Bra017278.1-P | Field mustard | cytosol | 45.95 | 46.84 |
| CDY40422 | Canola | cytosol | 45.95 | 46.84 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 45.71 | 46.72 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 45.71 | 46.72 |
| CDX84168 | Canola | cytosol | 45.0 | 46.55 |
| AT2G35930.1 | Thale cress | cytosol | 45.48 | 46.47 |
| CDX84587 | Canola | cytosol | 45.24 | 46.45 |
| Bra023044.1-P | Field mustard | cytosol | 45.24 | 46.45 |
| CDX79645 | Canola | cytosol | 45.0 | 46.32 |
| CDX75084 | Canola | cytosol | 44.76 | 46.31 |
| KRH68014 | Soybean | cytosol | 45.95 | 45.95 |
| Bra005309.1-P | Field mustard | cytosol | 41.9 | 45.48 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 44.29 | 45.48 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 44.76 | 45.41 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 43.57 | 45.07 |
| KRG96257 | Soybean | cytosol | 44.76 | 44.87 |
| KRH35744 | Soybean | cytosol | 44.76 | 44.87 |
| Solyc11g068920.1.1 | Tomato | cytosol | 43.1 | 44.8 |
| KRG96268 | Soybean | cytosol | 44.52 | 44.63 |
| PGSC0003DMT400054949 | Potato | cytosol | 43.1 | 44.58 |
| KRH72176 | Soybean | cytosol | 44.29 | 44.5 |
| Solyc01g007020.2.1 | Tomato | cytosol | 43.1 | 44.36 |
| KRH32856 | Soybean | cytosol | 44.29 | 44.29 |
| PGSC0003DMT400050493 | Potato | cytosol | 42.38 | 44.06 |
| CDY59599 | Canola | cytosol | 42.86 | 44.01 |
| CDX78096 | Canola | cytosol | 40.71 | 43.96 |
| CDY23218 | Canola | cytosol | 41.43 | 43.94 |
| KRH22633 | Soybean | cytosol, nucleus | 42.14 | 43.92 |
| CDX95337 | Canola | cytosol | 42.62 | 43.77 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 43.33 | 43.65 |
| PGSC0003DMT400055051 | Potato | cytosol | 40.71 | 43.4 |
| Solyc01g007010.2.1 | Tomato | cytosol | 42.14 | 43.38 |
| PGSC0003DMT400055050 | Potato | cytosol | 40.48 | 43.37 |
| KRH26691 | Soybean | cytosol | 39.52 | 42.89 |
| Solyc01g009330.1.1 | Tomato | cytosol | 43.1 | 42.49 |
| Bra033430.1-P | Field mustard | cytosol | 42.62 | 42.22 |
| PGSC0003DMT400054947 | Potato | cytosol | 30.24 | 42.05 |
| PGSC0003DMT400054948 | Potato | cytosol | 28.33 | 41.75 |
| Bra006925.1-P | Field mustard | cytosol | 43.1 | 41.61 |
| KRH25324 | Soybean | cytosol | 35.95 | 41.6 |
| AT3G52450.1 | Thale cress | cytosol | 42.86 | 41.38 |
| Bra012803.1-P | Field mustard | cytosol | 41.67 | 41.37 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 17.62 | 41.34 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 40.48 | 39.81 |
| PGSC0003DMT400038197 | Potato | cytosol | 42.62 | 39.43 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 32.14 | 31.91 |
| TraesCS7B01G105600.1 | Wheat | mitochondrion | 31.43 | 29.6 |
| TraesCS2B01G471900.1 | Wheat | cytosol | 29.05 | 29.19 |
| TraesCS2B01G323600.1 | Wheat | cytosol | 27.62 | 29.0 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 41.67 | 28.32 |
| TraesCS6B01G290700.1 | Wheat | cytosol | 29.05 | 28.31 |
| TraesCS4B01G228700.1 | Wheat | mitochondrion | 29.52 | 28.18 |
| TraesCS6B01G268300.1 | Wheat | extracellular | 27.14 | 28.01 |
| TraesCS6B01G342800.1 | Wheat | mitochondrion | 30.24 | 27.97 |
| TraesCS7B01G300000.1 | Wheat | cytosol, extracellular, nucleus | 24.52 | 26.82 |
| TraesCS2B01G315100.1 | Wheat | cytosol | 25.95 | 24.72 |
| TraesCS4B01G236200.1 | Wheat | cytosol | 26.67 | 24.4 |
| TraesCS1B01G284200.1 | Wheat | mitochondrion | 21.67 | 20.09 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF62 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS6B01G421900 | EnsemblPlants:TraesCS6B01G421900.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd16664 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:692489161..692490552
Molecular Weight (calculated)
45820.9 Da
IEP (calculated)
8.035
GRAVY (calculated)
0.043
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGPSVEVPP YFLCPISLEI MRDPVTLATG ITYDRSSIER WLSDGHATCP VTQQKLAEAD REATPNHTLR RLTQAWCALH AVERFPTPRP PLDAGRVAEI
101: VEEGHGAGLQ KELAALREIK AIVDESDRNR RCVEATPGAV EFLVSVVRNH ATVSKSAQDL LELSLDSPTS TSSPEEDALS VICSLKPSKK SLVRILEKNG
201: DFLDTLVYML RRPSYRSRCY GIILLKAMVS VMEPARLMAV RPEVVQEVVH VVSDRVSAKS VKAALNVLCR LCPWGRNRVK AVEAGAMTVL VELLLDEGGR
301: HPTELAVVAI DHLCGCAEGR SDLVAHPAGL AVVAKKVMRV SLTTTESAVR ALHAVATHSA TPAVLQEMLA VGVVAKLLLV LQVDAGERAR AKAKELLKMH
401: ARVWKDSPCL QVHLKAYYPC
101: VEEGHGAGLQ KELAALREIK AIVDESDRNR RCVEATPGAV EFLVSVVRNH ATVSKSAQDL LELSLDSPTS TSSPEEDALS VICSLKPSKK SLVRILEKNG
201: DFLDTLVYML RRPSYRSRCY GIILLKAMVS VMEPARLMAV RPEVVQEVVH VVSDRVSAKS VKAALNVLCR LCPWGRNRVK AVEAGAMTVL VELLLDEGGR
301: HPTELAVVAI DHLCGCAEGR SDLVAHPAGL AVVAKKVMRV SLTTTESAVR ALHAVATHSA TPAVLQEMLA VGVVAKLLLV LQVDAGERAR AKAKELLKMH
401: ARVWKDSPCL QVHLKAYYPC
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.