Factsheet for HORVU6Hr1G089560.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G070390.1	golgi
HORVU3Hr1G088110.3	golgi
HORVU6Hr1G077710.3
HORVU7Hr1G036470.3
HORVU7Hr1G036500.7
HORVU7Hr1G036540.3
HORVU7Hr1G036570.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	HORVU6Hr1G077710.3	AT4G25200.1	21798944
AT2G35930.1	HORVU7Hr1G036470.3	AT4G25200.1	21798944
AT2G35930.1	HORVU7Hr1G036500.7	AT4G25200.1	21798944
AT2G35930.1	HORVU7Hr1G036540.3	AT4G25200.1	21798944
AT2G35930.1	HORVU7Hr1G036570.2	AT4G25200.1	21798944
AT3G52450.1	HORVU1Hr1G070390.1	AT1G07000.1	23170036
AT3G52450.1	HORVU3Hr1G088110.3	AT1G07000.1	23170036
AT3G52450.1	HORVU1Hr1G070390.1	AT1G07000.1	23170036
AT3G52450.1	HORVU3Hr1G088110.3	AT1G07000.1	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G089590.1	Barley	plastid	99.56	99.34
TraesCS6B01G421900.1	Wheat	cytosol	86.92	93.33
TraesCS6B01G420600.1	Wheat	cytosol	86.47	92.86
TraesCS6B01G421400.1	Wheat	cytosol	86.03	92.38
TraesCS6D01G367100.1	Wheat	cytosol	86.03	92.38
TraesCS6A01G382800.1	Wheat	cytosol	86.03	91.94
TraesCS6A01G382300.1	Wheat	cytosol	85.81	91.71
TraesCS6D01G367600.1	Wheat	cytosol	85.59	91.25
EES06927	Sorghum	cytosol	69.84	74.29
OQU85086	Sorghum	cytosol	70.07	74.0
Os02t0539200-01	Rice	cytosol	70.07	71.49
Zm00001d016730_P001	Maize	cytosol	66.96	69.27
HORVU0Hr1G003810.1	Barley	cytosol	58.31	61.02
HORVU2Hr1G123130.1	Barley	cytosol	6.21	60.87
GSMUA_Achr7P03220_001	Banana	cytosol	36.59	53.23
GSMUA_Achr5P01000_001	Banana	cytosol	41.24	52.39
PGSC0003DMT400055045	Potato	cytosol	22.84	48.82
Solyc01g007030.2.1	Tomato	cytosol	22.84	48.82
CDY32070	Canola	cytosol	43.68	47.82
AT2G35930.1	Thale cress	cytosol	43.02	47.2
CDY40422	Canola	cytosol	43.02	47.09
Bra017278.1-P	Field mustard	cytosol	43.02	47.09
CDX79645	Canola	cytosol	42.35	46.81
CDX84168	Canola	cytosol	42.13	46.8
CDX75084	Canola	cytosol	42.13	46.8
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	42.57	46.72
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	42.35	46.47
Bra023044.1-P	Field mustard	cytosol	42.13	46.45
CDX84587	Canola	cytosol	42.13	46.45
Bra005309.1-P	Field mustard	cytosol	39.47	45.99
KRH68014	Soybean	cytosol	42.79	45.95
KRH72176	Soybean	cytosol	42.57	45.93
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	41.46	45.72
CDY23218	Canola	cytosol	40.13	45.71
KRH32856	Soybean	cytosol	42.13	45.24
VIT_06s0009g00320.t01	Wine grape	cytosol	41.46	45.17
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	40.58	45.07
CDY59599	Canola	cytosol	40.8	44.99
CDX78096	Canola	cytosol	38.8	44.99
KRH22633	Soybean	cytosol, nucleus	40.13	44.91
KRG96257	Soybean	cytosol	41.69	44.87
KRH35744	Soybean	cytosol	41.69	44.87
CDX95337	Canola	cytosol	40.58	44.74
KRG96268	Soybean	cytosol	41.46	44.63
PGSC0003DMT400054949	Potato	cytosol	40.13	44.58
Solyc01g007020.2.1	Tomato	cytosol	40.13	44.36
Solyc11g068920.1.1	Tomato	cytosol	39.69	44.31
Bra033430.1-P	Field mustard	cytosol	41.24	43.87
KRH26691	Soybean	cytosol	37.47	43.67
HORVU3Hr1G083500.1	Barley	cytosol	39.91	43.58
PGSC0003DMT400050493	Potato	cytosol	39.02	43.56
PGSC0003DMT400055051	Potato	cytosol	37.92	43.4
Solyc01g007010.2.1	Tomato	cytosol	39.25	43.38
PGSC0003DMT400055050	Potato	cytosol	37.47	43.11
Solyc01g009330.1.1	Tomato	cytosol	40.35	42.72
PGSC0003DMT400054947	Potato	cytosol	28.6	42.72
Bra012803.1-P	Field mustard	cytosol	39.91	42.55
Bra006925.1-P	Field mustard	cytosol	41.02	42.53
KRH25324	Soybean	cytosol	33.92	42.15
AT3G52450.1	Thale cress	cytosol	40.35	41.84
PGSC0003DMT400054948	Potato	cytosol	26.39	41.75
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	15.96	40.22
PGSC0003DMT400038197	Potato	cytosol	39.69	39.43
HORVU2Hr1G123050.1	Barley	cytosol	27.05	36.31
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	31.26	32.56
HORVU2Hr1G076490.1	Barley	mitochondrion	6.21	32.18
HORVU4Hr1G064070.1	Barley	mitochondrion	28.38	29.09
GSMUA_Achr9P29630_001	Banana	cytosol	39.25	28.64
HORVU6Hr1G066870.1	Barley	cytosol	26.83	28.21
HORVU7Hr1G040790.2	Barley	plastid	30.16	27.87
HORVU4Hr1G066070.1	Barley	cytosol	26.61	26.09
HORVU7Hr1G093780.1	Barley	cytosol, endoplasmic reticulum, extracellular	21.29	24.55
HORVU6Hr1G077120.1	Barley	plastid	27.72	24.41
HORVU2Hr1G074130.1	Barley	plastid	24.83	21.62
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	20.4	20.31

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A287V4E7	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:HORVU6Hr1G089560
EnsemblPlants:HORVU6Hr1G089560.1	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF62	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000B47D7D3
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287V4E7]

Coordinates

chrchr6H:+:570052386..570053961

Molecular Weight (calculated)

49251.9 Da

IEP (calculated)

8.611

GRAVY (calculated)

-0.006

Length

451 amino acids

Sequence
(BLAST)

001: STPSTNSVSV FFIRSALHQI HFTSNPSRPT AMEGPTVEVP PYFLCPISLE IMRDPVTLAT GITYDRTSIE RWISDGHATC PVTQQKIAEA DRDATPNHTL
101: RRLTQAWCSL HAVERFPTPR PPLDTSRVAE IVQEGHGAGR QQELAALREI KAIVAESDRN RRCVEATPGA VEFLVSVVTN HATTSKSAQD LLELSLDSPT
201: STSSPEEDAL SVICSLKPSK KSLLRILEKN VDFLDTLVCM LRRPSYRSRC YGIILLKAMV SVMEPARLMT VRTELVQEVV RVVSDRVSAK AVKAALNVLC
301: RLCPWGRNRV KAVEAGAVTV LVELLLDEGG RHPTELAVVA IDHLCGCAEG RSDLVAHPAG LAVVAKKAMR VSPTTTESAV RALHAVARHS PTPAVLQEML
401: AVGVVAKLLL VLQVDAGERA RAKAKELLKM HARVWKDSPC LQVHLKAHYP C

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.