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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400012249
PGSC0003DMT400023748
PGSC0003DMT400065456 golgi

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G35930.1 PGSC0003DMT400012249 AT4G25200.1 21798944
AT3G52450.1 PGSC0003DMT400065456 AT1G07000.1 23170036
AT3G52450.1 PGSC0003DMT400065456 AT1G07000.1 23170036
AT3G52450.1 PGSC0003DMT400023748 AT5G49830.2 23170036
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400055045 Potato cytosol 52.3 97.16
PGSC0003DMT400055051 Potato cytosol 97.45 96.95
PGSC0003DMT400054947 Potato cytosol 72.7 94.37
PGSC0003DMT400054949 Potato cytosol 95.15 91.87
PGSC0003DMT400055049 Potato cytosol, nucleus, plasma membrane 93.62 90.39
Solyc01g007000.2.1 Tomato cytosol, nucleus, vacuole 92.86 89.0
Solyc01g007010.2.1 Tomato cytosol 92.6 88.97
PGSC0003DMT400054948 Potato cytosol 64.29 88.42
Solyc01g007020.2.1 Tomato cytosol 91.84 88.24
VIT_08s0105g00190.t01 Wine grape cytosol, plastid, vacuole 66.33 63.26
VIT_08s0105g00180.t01 Wine grape cytosol, plastid, vacuole 66.07 63.02
KRH35744 Soybean cytosol 66.58 62.29
KRH68014 Soybean cytosol 65.56 61.19
KRG96257 Soybean cytosol 65.05 60.86
KRG96268 Soybean cytosol 64.8 60.62
KRH32856 Soybean cytosol 60.46 56.43
KRH72176 Soybean cytosol 59.69 55.98
Bra005309.1-P Field mustard cytosol 54.85 55.56
CDY59599 Canola cytosol 56.89 54.52
CDX78096 Canola cytosol 54.08 54.5
CDX95337 Canola cytosol 56.63 54.28
CDX79645 Canola cytosol 55.87 53.68
CDX84168 Canola cytosol 55.36 53.45
Bra017278.1-P Field mustard cytosol 56.12 53.4
CDY40422 Canola cytosol 56.12 53.4
CDY32070 Canola cytosol 56.12 53.4
Bra023044.1-P Field mustard cytosol 55.61 53.3
CDX75084 Canola cytosol 54.85 52.96
CDX84587 Canola cytosol 55.1 52.81
AT2G35930.1 Thale cress cytosol 54.85 52.31
CDY23218 Canola cytosol 52.55 52.02
GSMUA_Achr11P... Banana cytosol 49.49 52.01
Bra012803.1-P Field mustard cytosol 55.87 51.77
Bra006925.1-P Field mustard cytosol 56.89 51.26
GSMUA_Achr7P03220_001 Banana cytosol 40.31 50.97
AT3G52450.1 Thale cress cytosol 56.38 50.8
Bra033430.1-P Field mustard cytosol 54.59 50.47
PGSC0003DMT400050493 Potato cytosol 51.53 50.0
GSMUA_Achr10P... Banana cytosol 46.43 49.86
GSMUA_Achr8P30400_001 Banana cytosol 46.43 49.59
PGSC0003DMT400038197 Potato cytosol 55.36 47.8
GSMUA_Achr5P01000_001 Banana cytosol 41.07 45.35
PGSC0003DMT400038196 Potato cytosol 45.41 42.58
Os04t0686000-01 Rice cytosol 44.13 41.89
OQU85086 Sorghum cytosol 45.41 41.69
TraesCS6D01G367100.1 Wheat cytosol 44.39 41.43
TraesCS6D01G367600.1 Wheat cytosol 44.64 41.37
EES06927 Sorghum cytosol 44.64 41.27
PGSC0003DMT400015179 Potato cytosol 42.09 40.94
TraesCS6B01G421400.1 Wheat cytosol 43.62 40.71
Os01t0865700-00 Rice plastid 42.09 40.54
TraesCS6A01G382800.1 Wheat cytosol 43.62 40.52
TraesCS6A01G382300.1 Wheat cytosol 43.62 40.52
Os02t0539200-01 Rice cytosol 45.66 40.5
TraesCS6B01G421900.1 Wheat cytosol 43.37 40.48
TraesCS6B01G420600.1 Wheat cytosol 43.37 40.48
TraesCS2B01G314500.1 Wheat cytosol 44.39 40.37
HORVU0Hr1G003810.1 Barley cytosol 44.13 40.14
TraesCS2D01G296100.1 Wheat cytosol 43.88 39.91
TraesCS2A01G298000.1 Wheat cytosol 43.88 39.91
EES13136 Sorghum cytosol 42.6 39.2
TraesCS3B01G409400.1 Wheat cytosol 41.58 39.09
TraesCS3D01G370000.1 Wheat cytosol 41.58 39.0
TraesCS3A01G376900.1 Wheat cytosol 41.33 38.76
Zm00001d016730_P001 Maize cytosol 42.86 38.53
HORVU3Hr1G083500.1 Barley cytosol 40.56 38.5
Zm00001d001769_P001 Maize cytosol, endoplasmic reticulum, peroxisome 38.27 38.27
EES03937 Sorghum plastid 39.8 38.24
HORVU6Hr1G089560.1 Barley plastid 43.11 37.47
HORVU6Hr1G089590.1 Barley plastid 43.11 37.39
Zm00001d003745_P001 Maize nucleus 42.6 37.28
Zm00001d042738_P001 Maize cytosol 38.78 37.25
KXG26241 Sorghum cytosol 43.62 37.01
PGSC0003DMT400054946 Potato cytosol 37.24 34.68
HORVU2Hr1G123130.1 Barley cytosol 3.83 32.61
TraesCS2B01G601300.1 Wheat cytosol 35.46 32.55
TraesCSU01G036400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 35.46 32.55
HORVU2Hr1G123050.1 Barley cytosol 27.81 32.44
TraesCS2D01G594700.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 35.2 32.32
TraesCS6B01G209000.1 Wheat cytosol 32.65 30.26
PGSC0003DMT400004594 Potato cytosol 31.38 30.22
PGSC0003DMT400073836 Potato cytosol 31.89 29.83
TraesCS6D01G167300.1 Wheat cytosol 32.91 29.79
TraesCS6A01G176800.1 Wheat cytosol 32.65 29.63
HORVU6Hr1G034250.1 Barley cytosol, nucleus, peroxisome 32.14 29.1
PGSC0003DMT400075778 Potato mitochondrion 31.63 28.05
GSMUA_Achr9P29630_001 Banana cytosol 43.62 27.67
KXG23010 Sorghum cytosol 31.89 27.53
PGSC0003DMT400058621 Potato cytosol, mitochondrion 31.12 27.05
PGSC0003DMT400066588 Potato cytosol 28.06 26.51
Os12t0161100-00 Rice cytosol 29.34 26.2
PGSC0003DMT400065698 Potato cytosol 24.23 22.62
PGSC0003DMT400012566 Potato cytosol 24.49 21.38
Zm00001d023480_P001 Maize cytosol 28.32 19.86
PGSC0003DMT400060272 Potato cytosol 19.64 19.06
PGSC0003DMT400002079 Potato cytosol 19.64 18.42
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1InterPro:ARM-likeInterPro:ARM-type_foldGO:GO:0003674
GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0006464GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538InterPro:IPR003613InterPro:IPR011989
InterPro:IPR013083UniProt:M1BX98PFAM:PF04564EnsemblPlantsGene:PGSC0003DMG400021359PGSC:PGSC0003DMG400021359EnsemblPlants:PGSC0003DMT400055050
PFscan:PS51698PANTHER:PTHR22849PANTHER:PTHR22849:SF54SMART:SM00504SUPFAM:SSF48371SUPFAM:SSF57850
UniParc:UPI000295B41EInterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg::
Description
U-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021359]
Coordinates
chr1:+:2883409..2884637
Molecular Weight (calculated)
43661.4 Da
IEP (calculated)
8.829
GRAVY (calculated)
-0.110
Length
392 amino acids
Sequence
(BLAST)
001: MKDPVTISTG ITYDRENIEK WVFSEKNNTC PATKQSLTCI ELTPNVTLRR LIQSWCTINA SHGIERFPTP KPPVSKPQII KLLKEAKSPK LQMKSLKRLR
101: SIASENDANK HCMESAGAME FLASIINNNN SNEVFEEEEE GFMSTKDEAL SILYQLKLSE QGLKSLIMSG NGEFIESLTR VMQHGSYESR AYAVMLMKDM
201: FEVSTPTLLL SLKQEFFTQV VQVLRDEISQ KATKASLQVL VHACPFGRNR VKAAEAGAIR VLVDLLLDSS EKRVCELMLI LLDQLCLSAE GRAELLNHPG
301: GLAIVSKKIL RVSKVGSERA IKILHSISKF SSTPSVVQEM LSLGVVAKLC LVLQVDCGSK SKERAREILK FHAKAWSNSP CIPNNLLSSY PF
Best Arabidopsis Sequence Match ( AT3G52450.1 )
(BLAST)
001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
Arabidopsis Description
PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.