Factsheet for PGSC0003DMT400066588

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107980.2.1	Tomato	cytosol	97.11	97.11
VIT_03s0063g00180.t01	Wine grape	cytosol	77.59	77.59
KRH50316	Soybean	cytosol, plasma membrane, plastid	75.42	75.6
KRH70657	Soybean	cytosol	75.18	75.18
CDY50158	Canola	cytosol	68.67	68.35
Bra038205.1-P	Field mustard	cytosol	68.43	68.11
CDX95458	Canola	cytosol	67.95	67.63
AT3G19380.1	Thale cress	cytosol, golgi, plastid	68.43	67.46
CDX99233	Canola	cytosol, peroxisome, plastid	66.99	66.03
CDX92328	Canola	cytosol	67.23	65.96
CDY16513	Canola	cytosol	67.23	65.96
CDY59286	Canola	cytosol	67.23	65.96
Bra014206.1-P	Field mustard	cytosol	67.23	65.96
Bra022417.1-P	Field mustard	cytosol	66.99	65.88
Bra022415.1-P	Field mustard	cytosol	66.99	65.88
AT1G49780.1	Thale cress	cytoskeleton, cytosol, vacuole	66.75	65.8
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	49.16	59.13
EES06938	Sorghum	extracellular	53.01	54.05
GSMUA_Achr1P13220_001	Banana	cytosol	51.33	53.79
GSMUA_Achr6P25670_001	Banana	cytosol	55.42	53.74
Zm00001d050712_P001	Maize	extracellular, plastid	52.53	53.3
Os02t0548700-00	Rice	cytosol, extracellular, plastid	53.49	53.24
TraesCS6B01G268300.1	Wheat	extracellular	52.05	53.07
TraesCS6A01G256700.1	Wheat	extracellular	51.81	52.83
TraesCS6D01G237900.1	Wheat	extracellular	51.57	52.58
Zm00001d016764_P001	Maize	extracellular	52.29	51.91
PGSC0003DMT400050493	Potato	cytosol	29.4	30.2
PGSC0003DMT400075778	Potato	mitochondrion	31.81	29.86
PGSC0003DMT400054948	Potato	cytosol	20.48	29.82
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	28.43	29.06
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	31.57	29.05
PGSC0003DMT400054949	Potato	cytosol	28.19	28.82
PGSC0003DMT400073836	Potato	cytosol	28.43	28.16
PGSC0003DMT400055050	Potato	cytosol	26.51	28.06
PGSC0003DMT400060272	Potato	cytosol	26.99	27.72
PGSC0003DMT400055051	Potato	cytosol	26.02	27.41
PGSC0003DMT400038196	Potato	cytosol	27.23	27.03
PGSC0003DMT400038197	Potato	cytosol	28.67	26.21
PGSC0003DMT400012566	Potato	cytosol	26.75	24.72
PGSC0003DMT400055045	Potato	cytosol	12.53	24.64
PGSC0003DMT400065698	Potato	cytosol	24.82	24.52
PGSC0003DMT400054946	Potato	cytosol	23.86	23.52
PGSC0003DMT400015179	Potato	cytosol	22.41	23.08
PGSC0003DMT400004594	Potato	cytosol	22.17	22.6
PGSC0003DMT400054947	Potato	cytosol	15.66	21.52
PGSC0003DMT400002079	Potato	cytosol	21.45	21.29

Protein Annotations

Gene3D:1.25.10.10	Gene3D:1.25.10.110	EntrezGene:102587805	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like
InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M1CFU1	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400025884
PGSC:PGSC0003DMG400025884	EnsemblPlants:PGSC0003DMT400066588	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF56	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002948E32	InterPro:Ubox_domain	RefSeq:XP_006346399.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

U-box domain-containing protein 25 [Source:PGSC_GENE;Acc:PGSC0003DMG400025884]

Coordinates

chr1:-:84367850..84369855

Molecular Weight (calculated)

45441.1 Da

IEP (calculated)

6.612

GRAVY (calculated)

0.118

Length

415 amino acids

Sequence
(BLAST)

001: MPGSLDPLDV GVQIPYHFRC PISLELMRDP VTVCTGQTYD RQSIESWVAT GNITCPVTRA PLSDFTLIPN HTLRRLIQEW CVANRAFGVE RIPTPKQPAD
101: PSLVRSLLNQ AAAQSNHMNS RVAALRRLRG LARDSDKNRS VISANNAREI LLAIVFSRMD SDSSELNHES LAILSMFPLS EPECVFVASD PERVSYLVAM
201: LFHPSIDVRV NSAALIEIVV AGMRSSELRA QISNADDVFE GVVGILNYPL AYPRALKVGI KALFALCLVK QHRQRAVTAG AVEALIDRLQ DFEKCDAERA
301: LATIELLSRI PSGCAALASH ALTVPLLVKI ILKISERATE YAAGALLSLC SASEQAQKEA VAAGVLIQLL LLVQSDCTER AKRKAQMLLK QLRDCWPEDS
401: IANSDDFACS DVVPF

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.