Factsheet for GSMUA_Achr9P08750_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P13220_001	Banana	cytosol	82.32	71.72
GSMUA_Achr6P25670_001	Banana	cytosol	78.26	63.08
EES06938	Sorghum	extracellular	70.14	59.46
Zm00001d016764_P001	Maize	extracellular	70.14	57.89
Os02t0548700-00	Rice	cytosol, extracellular, plastid	69.86	57.79
TraesCS6B01G268300.1	Wheat	extracellular	66.96	56.76
Zm00001d050712_P001	Maize	extracellular, plastid	66.96	56.48
TraesCS6D01G237900.1	Wheat	extracellular	66.38	56.27
TraesCS6A01G256700.1	Wheat	extracellular	66.38	56.27
PGSC0003DMT400066588	Potato	cytosol	59.13	49.16
Solyc01g107980.2.1	Tomato	cytosol	58.55	48.67
KRH50316	Soybean	cytosol, plasma membrane, plastid	57.97	48.31
KRH70657	Soybean	cytosol	57.97	48.19
VIT_03s0063g00180.t01	Wine grape	cytosol	57.39	47.71
CDX95458	Canola	cytosol	54.78	45.32
CDY50158	Canola	cytosol	54.78	45.32
Bra038205.1-P	Field mustard	cytosol	54.78	45.32
CDX99233	Canola	cytosol, peroxisome, plastid	55.07	45.13
Bra022417.1-P	Field mustard	cytosol	54.2	44.31
Bra022415.1-P	Field mustard	cytosol	54.2	44.31
CDX92328	Canola	cytosol	54.2	44.21
AT3G19380.1	Thale cress	cytosol, golgi, plastid	53.62	43.94
Bra014206.1-P	Field mustard	cytosol	53.04	43.26
CDY16513	Canola	cytosol	53.04	43.26
CDY59286	Canola	cytosol	52.75	43.03
AT1G49780.1	Thale cress	cytoskeleton, cytosol, vacuole	52.46	42.99
GSMUA_Achr7P03220_001	Banana	cytosol	27.54	30.65
GSMUA_Achr8P30420_001	Banana	mitochondrion	23.48	29.67
GSMUA_Achr6P11310_001	Banana	cytosol	31.88	28.95
GSMUA_Achr6P02470_001	Banana	mitochondrion	31.59	28.68
GSMUA_Achr7P18640_001	Banana	mitochondrion	31.01	28.23
GSMUA_Achr10P...	Banana	cytosol	29.86	28.22
GSMUA_Achr10P...	Banana	cytosol	30.72	28.19
GSMUA_Achr11P...	Banana	cytosol	29.57	27.87
GSMUA_Achr8P30400_001	Banana	cytosol	29.28	27.52
GSMUA_Achr11P...	Banana	mitochondrion	33.33	27.06
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	31.01	26.88
GSMUA_Achr3P02030_001	Banana	plastid	31.59	26.01
GSMUA_Achr11P...	Banana	cytosol	27.83	25.74
GSMUA_Achr5P01000_001	Banana	cytosol	26.38	25.63
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	29.57	25.44
GSMUA_Achr5P01020_001	Banana	cytosol	29.28	25.19
GSMUA_Achr6P18140_001	Banana	cytosol	29.57	24.94
GSMUA_Achr1P16250_001	Banana	cytosol	26.96	22.85
GSMUA_Achr3P18060_001	Banana	cytosol	25.22	22.83
GSMUA_Achr5P13860_001	Banana	cytosol	20.0	22.77
GSMUA_Achr10P...	Banana	plastid	25.22	22.66
GSMUA_Achr4P07400_001	Banana	cytosol	28.12	22.35
GSMUA_Achr2P08620_001	Banana	cytosol	27.54	21.89
GSMUA_Achr8P04940_001	Banana	cytosol	26.96	21.53
GSMUA_Achr3P25750_001	Banana	cytosol	26.38	21.21
GSMUA_Achr9P29630_001	Banana	cytosol	31.88	17.8

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr9G08750_001	EnsemblPlants:GSMUA_Achr9P08750_001
EnsemblPlants:GSMUA_Achr9T08750_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0TYN4	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF56	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002951FF9	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Putative U-box domain-containing protein 25 [Source:GMGC_GENE;Acc:GSMUA_Achr9G08750_001]

Coordinates

chr9:+:5638998..5640625

Molecular Weight (calculated)

36077.9 Da

IEP (calculated)

8.225

GRAVY (calculated)

0.223

Length

345 amino acids

Sequence
(BLAST)

001: MPGSVAPLDL AGVTIPHHFR CPISLELMRD PVTVCTGQTY DRASIESWVA TGNITCPVTR TRLTDFTLIP NHTLRRLIQD WCVSHRSLGV ERIPTPKQPA
101: DAPLVRSLLA SAAVGSVASR IAFEGGEQPG CSDADQPALE AMAVLSMLPL SEAESATRAT IGGMDGVMGG LVALVEQPGN PRAVRVGIRG LLAMCLAKEN
201: RARAVAAGAA AAVVRRMGEL SSSDLERALA TVELLCRGEG GREAVVAGWG GGAAAVAALV RLMAWKASGR AAEHAAGALV AVLGGSEALQ REAVAAGVVA
301: HLLLMVQGGC SDRAKRKAQL LLKLLRPAWP YRDFIANSDD FIQAF

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.