Factsheet for GSMUA_Achr5P13860_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P18060_001	Banana	cytosol	53.14	42.26
EES11341	Sorghum	cytosol	42.24	31.07
Zm00001d026040_P001	Maize	cytosol	41.58	30.81
TraesCS2B01G471900.1	Wheat	cytosol	41.91	30.38
Zm00001d002498_P001	Maize	cytosol	41.58	30.36
Os02t0690600-01	Rice	cytosol	42.57	30.35
TraesCS2D01G449900.1	Wheat	cytosol	41.25	29.9
TraesCS2A01G450300.1	Wheat	cytosol	40.92	29.74
Os04t0589700-01	Rice	cytosol	40.92	29.45
HORVU6Hr1G066870.1	Barley	cytosol	41.58	29.37
TraesCS6B01G290700.1	Wheat	cytosol	41.58	29.23
TraesCS6A01G263700.1	Wheat	cytosol	40.92	28.84
Zm00001d017671_P001	Maize	cytosol	40.26	28.71
TraesCS6D01G251200.1	Wheat	cytosol	40.92	28.7
EES07426	Sorghum	cytosol	40.59	28.67
Solyc01g080920.2.1	Tomato	cytosol	37.29	27.63
PGSC0003DMT400004594	Potato	cytosol	36.96	27.52
GSMUA_Achr8P30400_001	Banana	cytosol	29.04	23.98
GSMUA_Achr11P...	Banana	cytosol	29.04	23.59
GSMUA_Achr7P03220_001	Banana	cytosol	23.43	22.9
GSMUA_Achr5P01000_001	Banana	cytosol	25.74	21.97
GSMUA_Achr11P...	Banana	cytosol	26.07	21.58
GSMUA_Achr10P...	Banana	cytosol	25.74	21.37
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	22.77	20.0
GSMUA_Achr1P16250_001	Banana	cytosol	25.74	19.16
OQU80253	Sorghum	mitochondrion	13.2	18.35
OQU81292	Sorghum	mitochondrion	12.54	17.67
GSMUA_Achr6P02470_001	Banana	mitochondrion	22.11	17.63
GSMUA_Achr6P25670_001	Banana	cytosol	24.42	17.29
GSMUA_Achr5P01020_001	Banana	cytosol	22.77	17.21
GSMUA_Achr1P13220_001	Banana	cytosol	22.11	16.92
GSMUA_Achr8P30420_001	Banana	mitochondrion	15.18	16.85
GSMUA_Achr6P11310_001	Banana	cytosol	21.12	16.84
GSMUA_Achr7P18640_001	Banana	mitochondrion	20.79	16.62
GSMUA_Achr10P...	Banana	cytosol	20.13	16.22
GSMUA_Achr6P18140_001	Banana	cytosol	21.78	16.14
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	21.12	16.08
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	20.46	15.46
GSMUA_Achr10P...	Banana	plastid	19.14	15.1
GSMUA_Achr3P25750_001	Banana	cytosol	21.12	14.92
GSMUA_Achr11P...	Banana	mitochondrion	20.46	14.59
GSMUA_Achr8P04940_001	Banana	cytosol	20.79	14.58
GSMUA_Achr2P08620_001	Banana	cytosol	20.46	14.29
GSMUA_Achr3P02030_001	Banana	plastid	19.47	14.08
GSMUA_Achr4P07400_001	Banana	cytosol	19.8	13.82
GSMUA_Achr9P29630_001	Banana	cytosol	26.4	12.95

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G13860_001	EnsemblPlants:GSMUA_Achr5P13860_001	EnsemblPlants:GSMUA_Achr5T13860_001	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M0SYB5	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849
PANTHER:PTHR22849:SF23	SMART:SM00504	SUPFAM:SSF57850	UniParc:UPI0002953E55	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Putative E3 ubiquitin-protein ligase PUB23 [Source:GMGC_GENE;Acc:GSMUA_Achr5G13860_001]

Coordinates

chr5:+:9963232..9964239

Molecular Weight (calculated)

33808.7 Da

IEP (calculated)

7.532

GRAVY (calculated)

-0.235

Length

303 amino acids

Sequence
(BLAST)

001: MDDASIMFQC PISMEPMEDP VTIATGISYD RECIEKWLFV YKQSTCPVTM RRLPNSDLIP NHTLRRLMSS FREAAGGGPA KPPPRLPDVI DHDELVSLLK
101: NVQTGPFRVT YLRKLRALVD KDVELQKDLI RLGGAQVLGR IMASHGVVEY WDLDDFRDRD EAVGVLALLP LSDEATVELL WKPDCWTNTV AAEDGDVVKS
201: LLDLVSDEVS TRLTSSSLDV LLEIVATSKK NRLKAIEAGT IRVSVEILTG ASARRCCCCS RGSASAPRGD RPWPTTGWAW RRCPRRYCGC RGWRPNWASR
301: SCG

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.