Factsheet for GSMUA_Achr6P02470_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P18640_001	Banana	mitochondrion	67.11	67.28
GSMUA_Achr6P11310_001	Banana	cytosol	58.16	58.16
GSMUA_Achr10P...	Banana	cytosol	56.05	56.65
GSMUA_Achr11P...	Banana	mitochondrion	56.84	50.82
GSMUA_Achr3P02030_001	Banana	plastid	53.16	48.21
TraesCS7D01G201600.1	Wheat	mitochondrion	55.26	47.51
TraesCS7B01G105600.1	Wheat	mitochondrion	55.26	47.09
VIT_01s0011g06140.t01	Wine grape	mitochondrion	52.89	45.48
Os06t0248500-00	Rice	mitochondrion	53.68	45.03
Zm00001d044734_P001	Maize	mitochondrion	52.37	45.02
TraesCS6A01G312600.1	Wheat	mitochondrion	53.16	44.4
TraesCS6B01G342800.1	Wheat	mitochondrion	52.89	44.27
KXG19704	Sorghum	mitochondrion	53.42	44.23
Zm00001d017976_P001	Maize	mitochondrion	52.37	44.03
TraesCS6D01G292200.1	Wheat	mitochondrion	52.37	43.83
TraesCS4B01G228700.1	Wheat	mitochondrion	50.26	43.41
HORVU7Hr1G040790.2	Barley	plastid	55.0	42.83
Os02t0738200-01	Rice	mitochondrion	51.32	42.76
TraesCS4D01G229900.1	Wheat	mitochondrion	49.47	42.73
HORVU4Hr1G064070.1	Barley	mitochondrion	49.21	42.5
EES05563	Sorghum	mitochondrion	51.58	42.42
Os03t0240600-01	Rice	plastid	49.21	42.02
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	48.68	41.02
Zm00001d028374_P001	Maize	mitochondrion	48.16	40.94
EER92576	Sorghum	mitochondrion	48.68	40.75
Solyc01g005160.2.1	Tomato	mitochondrion	47.89	40.44
KRH39018	Soybean	mitochondrion	46.32	40.18
HORVU6Hr1G077120.1	Barley	plastid	53.42	39.65
KRH48691	Soybean	cytosol	45.26	39.36
KRG97963	Soybean	mitochondrion	44.47	39.21
KRH30918	Soybean	mitochondrion	44.47	38.85
Solyc04g008100.1.1	Tomato	cytosol	44.74	38.46
PGSC0003DMT400075778	Potato	mitochondrion	43.95	37.78
KRH17309	Soybean	cytosol, mitochondrion	42.11	36.45
KRH72959	Soybean	cytosol, mitochondrion	41.84	36.3
GSMUA_Achr7P03220_001	Banana	cytosol	29.47	36.13
Zm00001d030251_P001	Maize	cytosol	42.11	36.04
PGSC0003DMT400073836	Potato	cytosol	39.21	35.56
TraesCS5A01G088600.1	Wheat	cytosol	31.58	35.09
Solyc11g006030.1.1	Tomato	cytosol	39.47	34.88
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	39.47	34.48
GSMUA_Achr5P01000_001	Banana	cytosol	31.58	33.8
CDY27655	Canola	mitochondrion	38.68	33.56
Bra025442.1-P	Field mustard	mitochondrion	38.68	33.56
CDX99694	Canola	mitochondrion	38.16	33.1
CDY16432	Canola	cytosol	36.84	32.71
CDY50319	Canola	cytosol	36.58	32.55
Bra039752.1-P	Field mustard	cytosol	36.05	32.46
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	28.68	31.59
KXG38738	Sorghum	plastid	40.79	31.38
AT1G66160.1	Thale cress	cytosol	35.53	31.32
GSMUA_Achr8P30400_001	Banana	cytosol	29.47	30.52
GSMUA_Achr10P...	Banana	cytosol	28.42	29.59
GSMUA_Achr1P13220_001	Banana	cytosol	30.79	29.55
GSMUA_Achr8P30420_001	Banana	mitochondrion	21.05	29.3
CDX92016	Canola	mitochondrion	27.89	28.8
CDY28714	Canola	mitochondrion	28.42	28.8
Bra040605.1-P	Field mustard	mitochondrion	28.16	28.53
CDY51529	Canola	mitochondrion	28.16	28.53
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	27.37	28.26
AT3G02840.1	Thale cress	mitochondrion	28.16	28.23
GSMUA_Achr3P18060_001	Banana	cytosol	27.89	27.82
Bra001067.1-P	Field mustard	mitochondrion	26.84	27.72
GSMUA_Achr11P...	Banana	cytosol	26.58	27.6
GSMUA_Achr11P...	Banana	cytosol	26.84	27.35
GSMUA_Achr6P25670_001	Banana	cytosol	30.26	26.87
GSMUA_Achr1P16250_001	Banana	cytosol	27.89	26.04
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	26.84	25.63
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	26.58	25.19
GSMUA_Achr6P18140_001	Banana	cytosol	26.84	24.94
GSMUA_Achr5P01020_001	Banana	cytosol	25.53	24.19
GSMUA_Achr10P...	Banana	plastid	23.68	23.44
GSMUA_Achr8P04940_001	Banana	cytosol	26.58	23.38
GSMUA_Achr2P08620_001	Banana	cytosol	26.58	23.27
GSMUA_Achr3P25750_001	Banana	cytosol	25.79	22.84
GSMUA_Achr5P13860_001	Banana	cytosol	17.63	22.11
GSMUA_Achr4P07400_001	Banana	cytosol	24.74	21.66
GSMUA_Achr9P29630_001	Banana	cytosol	30.53	18.77

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G02470_001	EnsemblPlants:GSMUA_Achr6P02470_001
EnsemblPlants:GSMUA_Achr6T02470_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0T3J5	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF107	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000294820E	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Putative U-box domain-containing protein 21 [Source:GMGC_GENE;Acc:GSMUA_Achr6G02470_001]

Coordinates

chr6:-:1615103..1616422

Molecular Weight (calculated)

40982.0 Da

IEP (calculated)

8.426

GRAVY (calculated)

0.060

Length

380 amino acids

Sequence
(BLAST)

001: MASARRTQKP SSRFSFVKRI PTADPTAELP VPAAFRCPIS LELMKDPVTL HTGITYDRQS IESWLEVGSL TCPVTNQALG NDELLPNHTI RRLIQDWCAS
101: ELLSEIAFAG RRGDRARCQE LVGKIKAAGA AEEILSALPL FFPLDQDSCR QLSSLKSLES IVSVLRSGDL DARVNAALVL RELLSSLPPR RINGVAGTDG
201: LVEALSKLIQ NPISPRATKA SLVAAFYLVD SSDRAAGALV DTGIIPSLLE ILVDSDKGMC EKALAVLDGV LGCSRGREMA YGHALTVPVL VKKMLRVSDM
301: ATEFAVSALW KLCRNEKRGG GCSMEAVRVG AFQKSLLLVQ VGCSGATKEK ANDLLKLLNG CRGSMECTEA VDFRGLKRPF

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.