Factsheet for PGSC0003DMT400058621

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005160.2.1	Tomato	mitochondrion	94.01	94.22
PGSC0003DMT400075778	Potato	mitochondrion	62.53	63.8
VIT_01s0011g06140.t01	Wine grape	mitochondrion	59.2	60.41
PGSC0003DMT400073836	Potato	cytosol	46.12	49.64
GSMUA_Achr6P02470_001	Banana	mitochondrion	41.02	48.68
GSMUA_Achr7P18640_001	Banana	mitochondrion	40.58	48.28
GSMUA_Achr6P11310_001	Banana	cytosol	39.25	46.58
GSMUA_Achr10P...	Banana	cytosol	38.58	46.28
GSMUA_Achr11P...	Banana	mitochondrion	42.57	45.18
TraesCS6B01G342800.1	Wheat	mitochondrion	43.9	43.61
TraesCS6A01G312600.1	Wheat	mitochondrion	43.9	43.52
HORVU4Hr1G064070.1	Barley	mitochondrion	42.13	43.18
Os03t0240600-01	Rice	plastid	42.57	43.15
Zm00001d017976_P001	Maize	mitochondrion	43.24	43.14
TraesCS6D01G292200.1	Wheat	mitochondrion	43.24	42.95
TraesCS4B01G228700.1	Wheat	mitochondrion	41.69	42.73
TraesCS4D01G229900.1	Wheat	mitochondrion	41.24	42.27
Os02t0738200-01	Rice	mitochondrion	42.57	42.11
TraesCS7B01G105600.1	Wheat	mitochondrion	41.46	41.93
TraesCS7D01G201600.1	Wheat	mitochondrion	41.02	41.86
GSMUA_Achr3P02030_001	Banana	plastid	38.8	41.77
Zm00001d028374_P001	Maize	mitochondrion	41.24	41.61
EES05563	Sorghum	mitochondrion	42.57	41.56
EER92576	Sorghum	mitochondrion	41.46	41.19
Os06t0248500-00	Rice	mitochondrion	41.24	41.06
Zm00001d044734_P001	Maize	mitochondrion	39.25	40.05
KXG19704	Sorghum	mitochondrion	40.13	39.43
HORVU6Hr1G077120.1	Barley	plastid	43.9	38.67
HORVU7Hr1G040790.2	Barley	plastid	40.8	37.7
Zm00001d030251_P001	Maize	cytosol	34.15	34.68
PGSC0003DMT400050493	Potato	cytosol	30.6	34.16
TraesCS5A01G088600.1	Wheat	cytosol	25.5	33.63
PGSC0003DMT400054949	Potato	cytosol	29.27	32.51
KXG38738	Sorghum	plastid	34.81	31.78
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	28.6	31.77
PGSC0003DMT400066588	Potato	cytosol	29.05	31.57
PGSC0003DMT400054948	Potato	cytosol	19.73	31.23
PGSC0003DMT400055050	Potato	cytosol	27.05	31.12
PGSC0003DMT400055051	Potato	cytosol	27.05	30.96
PGSC0003DMT400038197	Potato	cytosol	29.49	29.3
PGSC0003DMT400038196	Potato	cytosol	26.39	28.47
PGSC0003DMT400055045	Potato	cytosol	13.3	28.44
PGSC0003DMT400004594	Potato	cytosol	25.06	27.76
PGSC0003DMT400054946	Potato	cytosol	24.39	26.13
PGSC0003DMT400015179	Potato	cytosol	23.28	26.05
PGSC0003DMT400060272	Potato	cytosol	23.06	25.74
PGSC0003DMT400065698	Potato	cytosol	23.5	25.24
PGSC0003DMT400054947	Potato	cytosol	16.41	24.5
PGSC0003DMT400002079	Potato	cytosol	22.17	23.92
PGSC0003DMT400012566	Potato	cytosol	23.06	23.16

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102598134	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:ADI46216	ProteinID:ADI46216.1
ProteinID:ADI46217	ProteinID:ADI46217.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EMBL:HM150715	EMBL:HM150716	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M1C302	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400022775	PGSC:PGSC0003DMG400022775
EnsemblPlants:PGSC0003DMT400058621	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF102	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000294ACA3	InterPro:Ubox_domain	RefSeq:XP_006364055.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

CMPG1b [Source:PGSC_GENE;Acc:PGSC0003DMG400022775]

Coordinates

chr1:+:404941..406788

Molecular Weight (calculated)

50428.9 Da

IEP (calculated)

8.630

GRAVY (calculated)

-0.055

Length

451 amino acids

Sequence
(BLAST)

001: MIATWRKKRT EKRVIKRGFM KKTIMELVIP SQFTCPISLD LMKDPVTLST GITYDRENIE KWINEGGNQT CPITNQDLKS YGSGITTIDP VLIPNHNIRK
101: MIQQWCVENK EHGIDRIPTP RIPVSSSDVS ELLAKITNSS KLEMQDSRLC EELVTRVKNL ASESDRNKCC FITNGIGKVL SSAFLELSKG KNAKNASTEE
201: VILSTLTLFL PLDVKSKTIL GSISSLRCIA WFLKNGSLSS RRNAVLVLRE IMKLEEKEKV EILLNIEGAL EGLVKLVKEP ICPNTTKASL LTIYHMVNNS
301: SSQSSRSRFV DVGLVELLIE ILVDCDKSIC EKALGVLDGI LSYEEGVKRA YNYALSVPVL VKKLLRVSDL ATEFSVSILW KICKNENNGD CGVLVEALQV
401: GAFQKLLLML QVGCSEITKE KASELLKLLN VHRDRAECVD SLDFKSLKRT F

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.