Factsheet for GSMUA_Achr3P02030_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	61.34	68.35
GSMUA_Achr6P11310_001	Banana	cytosol	58.71	64.74
GSMUA_Achr11P...	Banana	mitochondrion	59.19	58.35
GSMUA_Achr7P18640_001	Banana	mitochondrion	50.36	55.67
GSMUA_Achr6P02470_001	Banana	mitochondrion	48.21	53.16
VIT_01s0011g06140.t01	Wine grape	mitochondrion	48.69	46.15
TraesCS7D01G201600.1	Wheat	mitochondrion	45.82	43.44
TraesCS7B01G105600.1	Wheat	mitochondrion	46.06	43.27
KXG19704	Sorghum	mitochondrion	47.02	42.92
Os06t0248500-00	Rice	mitochondrion	46.06	42.6
Zm00001d044734_P001	Maize	mitochondrion	44.63	42.31
HORVU4Hr1G064070.1	Barley	mitochondrion	44.39	42.27
TraesCS4B01G228700.1	Wheat	mitochondrion	44.39	42.27
TraesCS4D01G229900.1	Wheat	mitochondrion	44.15	42.05
EES05563	Sorghum	mitochondrion	45.35	41.13
Zm00001d017976_P001	Maize	mitochondrion	44.15	40.93
TraesCS6A01G312600.1	Wheat	mitochondrion	44.15	40.66
TraesCS6B01G342800.1	Wheat	mitochondrion	43.91	40.53
Zm00001d028374_P001	Maize	mitochondrion	43.2	40.49
Os02t0738200-01	Rice	mitochondrion	43.91	40.35
TraesCS6D01G292200.1	Wheat	mitochondrion	43.68	40.31
Os03t0240600-01	Rice	plastid	42.48	40.0
KRG97963	Soybean	mitochondrion	41.05	39.91
EER92576	Sorghum	mitochondrion	43.2	39.87
HORVU7Hr1G040790.2	Barley	plastid	46.3	39.75
KRH30918	Soybean	mitochondrion	40.81	39.31
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	41.77	38.8
Solyc04g008100.1.1	Tomato	cytosol	40.81	38.69
KRH72959	Soybean	cytosol, mitochondrion	40.33	38.58
PGSC0003DMT400075778	Potato	mitochondrion	40.1	38.01
Solyc01g005160.2.1	Tomato	mitochondrion	40.57	37.78
KRH39018	Soybean	mitochondrion	39.38	37.67
KRH17309	Soybean	cytosol, mitochondrion	39.38	37.59
KRH48691	Soybean	cytosol	39.14	37.53
Zm00001d030251_P001	Maize	cytosol	38.42	36.26
HORVU6Hr1G077120.1	Barley	plastid	44.15	36.13
PGSC0003DMT400073836	Potato	cytosol	35.8	35.8
Solyc11g006030.1.1	Tomato	cytosol	36.04	35.12
TraesCS5A01G088600.1	Wheat	cytosol	28.64	35.09
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	35.56	34.25
CDY16432	Canola	cytosol	34.61	33.88
Bra039752.1-P	Field mustard	cytosol	33.89	33.65
KXG38738	Sorghum	plastid	39.62	33.6
CDY50319	Canola	cytosol	34.13	33.49
Bra025442.1-P	Field mustard	mitochondrion	34.61	33.1
CDY27655	Canola	mitochondrion	34.61	33.1
CDX99694	Canola	mitochondrion	34.13	32.65
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	26.01	31.59
AT1G66160.1	Thale cress	cytosol	32.46	31.55
GSMUA_Achr7P03220_001	Banana	cytosol	23.15	31.29
GSMUA_Achr10P...	Banana	cytosol	26.25	30.14
GSMUA_Achr5P01000_001	Banana	cytosol	25.3	29.86
CDX92016	Canola	mitochondrion	26.01	29.62
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	26.01	29.62
AT3G02840.1	Thale cress	mitochondrion	26.73	29.55
Bra040605.1-P	Field mustard	mitochondrion	26.01	29.07
CDY28714	Canola	mitochondrion	26.01	29.07
CDY51529	Canola	mitochondrion	26.01	29.07
GSMUA_Achr1P13220_001	Banana	cytosol	27.45	29.04
Bra001067.1-P	Field mustard	mitochondrion	25.3	28.8
GSMUA_Achr8P30420_001	Banana	mitochondrion	18.62	28.57
GSMUA_Achr6P25670_001	Banana	cytosol	28.64	28.04
GSMUA_Achr11P...	Banana	cytosol	24.58	27.61
GSMUA_Achr8P30400_001	Banana	cytosol	24.11	27.52
GSMUA_Achr11P...	Banana	cytosol	22.2	25.41
GSMUA_Achr6P18140_001	Banana	cytosol	24.58	25.18
GSMUA_Achr3P18060_001	Banana	cytosol	22.43	24.67
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	23.15	24.19
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	22.2	23.37
GSMUA_Achr2P08620_001	Banana	cytosol	23.87	23.04
GSMUA_Achr8P04940_001	Banana	cytosol	23.63	22.92
GSMUA_Achr10P...	Banana	plastid	20.53	22.4
GSMUA_Achr1P16250_001	Banana	cytosol	21.48	22.11
GSMUA_Achr5P01020_001	Banana	cytosol	20.76	21.7
GSMUA_Achr3P25750_001	Banana	cytosol	22.2	21.68
GSMUA_Achr4P07400_001	Banana	cytosol	22.2	21.43
GSMUA_Achr5P13860_001	Banana	cytosol	14.08	19.47
GSMUA_Achr9P29630_001	Banana	cytosol	23.63	16.02

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr3G02030_001	EnsemblPlants:GSMUA_Achr3P02030_001
EnsemblPlants:GSMUA_Achr3T02030_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0SB21	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF107	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000294DEA5	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Putative U-box domain-containing protein 21 [Source:GMGC_GENE;Acc:GSMUA_Achr3G02030_001]

Coordinates

chr3:-:1351349..1352952

Molecular Weight (calculated)

45715.0 Da

IEP (calculated)

8.379

GRAVY (calculated)

0.083

Length

419 amino acids

Sequence
(BLAST)

001: MKSFDSPKPF QTSSHRSLFE RFIPSPSRSA LIRLAHSLPF PSLDLLLAAA AKLSLFMASP RRSRESNLKT NLALDVAIPT HFRCPISLDL MRDPVTASTG
101: ITYDRQSIET WQELGNTSCP VTGQQLQHQD LIPNHSIRKM IQDWCVMDVL SEIATASRQG DVAACARSEV LAAMAMLLPL DEEAAACIGS SPESLKRLVS
201: VLRCGDVAAR LHAALTVKEL LASGGARADA IAATKGMGEA LVKLVKRPIS SRAMKASLVS IFYMVNSDEK TATRIVDLGL VPVLVEILVD DEKSMCEKAL
301: AVLDGLLSCE RGRENACGHA LTVPVLAKKM FRVSDMATEF VVSALWKLCK DHKGGGRERC LLDALQAGTF HKLLLLLQVG CGEATKERVT DLLRLLNGYR
401: GRIQCVDTMD FVGLKRPFE

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.