CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025442.1-P	Field mustard	mitochondrion	98.86	98.86
CDX99694	Canola	mitochondrion	98.17	98.17
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	77.63	78.16
CDY16432	Canola	cytosol	58.45	59.81
CDY50319	Canola	cytosol	57.31	58.78
KRG97963	Soybean	mitochondrion	44.75	45.48
KRH72959	Soybean	cytosol, mitochondrion	45.43	45.43
KRH17309	Soybean	cytosol, mitochondrion	44.98	44.87
KRH30918	Soybean	mitochondrion	44.52	44.83
PGSC0003DMT400073836	Potato	cytosol	42.69	44.63
Solyc11g006030.1.1	Tomato	cytosol	42.69	43.49
GSMUA_Achr10P...	Banana	cytosol	34.02	39.63
GSMUA_Achr6P11310_001	Banana	cytosol	34.25	39.47
GSMUA_Achr11P...	Banana	mitochondrion	37.67	38.82
GSMUA_Achr6P02470_001	Banana	mitochondrion	33.56	38.68
GSMUA_Achr7P18640_001	Banana	mitochondrion	32.88	37.99
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	30.82	36.68
Zm00001d017976_P001	Maize	mitochondrion	37.67	36.5
CDX92016	Canola	mitochondrion	30.59	36.41
TraesCS7D01G201600.1	Wheat	mitochondrion	35.84	35.52
Os06t0248500-00	Rice	mitochondrion	36.53	35.32
TraesCS7B01G105600.1	Wheat	mitochondrion	35.84	35.2
Zm00001d044734_P001	Maize	mitochondrion	35.39	35.07
CDY51529	Canola	mitochondrion	29.68	34.67
GSMUA_Achr3P02030_001	Banana	plastid	33.1	34.61
TraesCS4B01G228700.1	Wheat	mitochondrion	34.7	34.55
KXG19704	Sorghum	mitochondrion	36.07	34.42
Zm00001d028374_P001	Maize	mitochondrion	34.93	34.23
EES05563	Sorghum	mitochondrion	36.07	34.2
EER92576	Sorghum	mitochondrion	35.39	34.14
CDY28714	Canola	mitochondrion	29.22	34.13
TraesCS4D01G229900.1	Wheat	mitochondrion	34.02	33.86
HORVU4Hr1G064070.1	Barley	mitochondrion	34.02	33.86
Os03t0240600-01	Rice	plastid	34.02	33.48
TraesCS6A01G312600.1	Wheat	mitochondrion	34.7	33.41
Zm00001d030251_P001	Maize	cytosol	33.56	33.11
TraesCS6B01G342800.1	Wheat	mitochondrion	34.02	32.82
Os02t0738200-01	Rice	mitochondrion	34.02	32.68
CDX78096	Canola	cytosol	28.77	32.39
TraesCS6D01G292200.1	Wheat	mitochondrion	33.56	32.38
HORVU7Hr1G040790.2	Barley	plastid	36.07	32.38
CDY59599	Canola	cytosol	29.68	31.78
CDX79645	Canola	cytosol	28.77	30.88
CDY23218	Canola	cytosol	27.85	30.81
CDX95337	Canola	cytosol	28.77	30.81
CDY16513	Canola	cytosol	29.68	30.73
CDX84587	Canola	cytosol	28.54	30.56
CDY59286	Canola	cytosol	29.45	30.5
TraesCS5A01G088600.1	Wheat	cytosol	23.74	30.41
CDY40422	Canola	cytosol	28.54	30.34
CDY32070	Canola	cytosol	28.54	30.34
CDX75084	Canola	cytosol	28.08	30.3
CDX84168	Canola	cytosol	28.08	30.3
CDX99233	Canola	cytosol, peroxisome, plastid	29.0	30.17
CDX95458	Canola	cytosol	28.31	29.74
CDX92328	Canola	cytosol	28.54	29.55
HORVU6Hr1G077120.1	Barley	plastid	34.47	29.49
CDY50158	Canola	cytosol	27.85	29.26
KXG38738	Sorghum	plastid	32.88	29.15
CDX92262	Canola	cytosol	24.66	26.15
CDX99325	Canola	cytosol	24.2	25.06
CDY47911	Canola	cytosol	23.97	24.88
CDY08864	Canola	cytosol	23.74	24.82
CDY53920	Canola	cytosol	24.66	24.77
CDX75980	Canola	cytosol	23.97	24.76
CDX84538	Canola	cytosol	23.52	24.58
CDY71041	Canola	cytosol	22.83	24.21
CDX82332	Canola	cytosol	23.29	24.06
CDX73849	Canola	cytosol	25.57	23.98
CDY08490	Canola	cytosol	23.29	23.08
CDY67531	Canola	cytosol	23.52	23.04
CDY01063	Canola	cytosol	23.06	22.95
CDY53333	Canola	cytosol	21.92	21.48
CDX83098	Canola	cytosol	21.69	21.44
CDY18670	Canola	cytosol	21.0	20.77
CDY69247	Canola	cytosol	20.78	20.54

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078GM75	UniProt:A0A078GM75	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlants:CDY27655	ProteinID:CDY27655	ProteinID:CDY27655.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00038420001	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF61	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EEA05E	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaUnng00050DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078GM75]

Coordinates

chrLK032208:-:25754..27070

Molecular Weight (calculated)

48606.3 Da

IEP (calculated)

5.297

GRAVY (calculated)

-0.002

Length

438 amino acids

Sequence
(BLAST)

001: MGFTWGMRLR GASKKKIAPV MSWSESTSEP DITIPPEFQC PISIDLMKDP VIISTGITYD RTSIEKWIDS GNNTCPVTNT VLTTFDQIPN HTIRKMIQGW
101: CVEIGSSLIE RIPTPRVPLM PCEVYEICRK LSSATRRGDY EKCEEIIWRI KKLEKESEKN RNCIIENGVA LVLCDCFEKF SADEKSTSLM GKILSLLTWM
201: VPIGWEGLTT LASASSFRCI AGFLRSKDDT VRENAAFLLK EILSLEETQV HAFAEENGVA AAFLKLIRDS VSSSATRSSL IAVSQMVLAK PEIASVFLEI
301: GLVNQTVEMI IDGENSVCEK ALAVLDAVCE TSEGIEEVRK NALVMPLLVK KILKVSEQGT GSSVSAILKL CKAGKASTVE EAVRLGAFQK MFLVLQVGYG
401: EETKEKATEL LKMMNTQMKL MSDDVDSSME FKYLKKPF

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.