Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022347.1-P | Field mustard | cytosol | 95.16 | 92.69 |
| CDX99325 | Canola | cytosol | 93.46 | 91.25 |
| CDY71041 | Canola | cytosol | 77.97 | 77.97 |
| AT3G18710.1 | Thale cress | cytosol | 78.21 | 77.83 |
| CDX82332 | Canola | cytosol | 77.48 | 75.47 |
| CDX75980 | Canola | cytosol | 76.27 | 74.29 |
| CDY08864 | Canola | cytosol | 53.75 | 52.98 |
| CDX84538 | Canola | cytosol | 53.75 | 52.98 |
| VIT_04s0044g00870.t01 | Wine grape | cytosol | 49.88 | 50.0 |
| KRH43397 | Soybean | cytosol | 48.43 | 47.85 |
| KRH59546 | Soybean | cytosol | 47.7 | 47.13 |
| KRH53869 | Soybean | cytosol | 46.97 | 46.52 |
| GSMUA_Achr8P30420_001 | Banana | mitochondrion | 30.51 | 46.15 |
| PGSC0003DMT400065698 | Potato | cytosol | 42.37 | 41.67 |
| Solyc11g005700.1.1 | Tomato | cytosol | 42.13 | 41.43 |
| KRH36899 | Soybean | cytosol | 36.08 | 40.16 |
| GSMUA_Achr10P... | Banana | plastid | 33.66 | 36.2 |
| GSMUA_Achr6P18140_001 | Banana | cytosol | 35.35 | 35.7 |
| GSMUA_Achr5P01020_001 | Banana | cytosol | 32.69 | 33.67 |
| Zm00001d016719_P001 | Maize | cytosol | 34.38 | 33.1 |
| Zm00001d025379_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 34.62 | 32.21 |
| TraesCS2A01G298600.1 | Wheat | cytosol, mitochondrion, plastid | 34.14 | 31.97 |
| TraesCS2D01G296700.1 | Wheat | cytosol, mitochondrion, plastid | 34.14 | 31.97 |
| TraesCS2B01G315100.1 | Wheat | cytosol | 33.9 | 31.75 |
| Zm00001d050689_P001 | Maize | cytosol | 32.93 | 31.7 |
| EES05205 | Sorghum | cytosol | 34.62 | 31.57 |
| Os04t0418500-01 | Rice | plastid | 34.38 | 31.49 |
| OQU81548 | Sorghum | mitochondrion | 33.9 | 31.32 |
| Os02t0540700-00 | Rice | plastid | 35.11 | 28.71 |
| HORVU2Hr1G074130.1 | Barley | plastid | 33.9 | 27.03 |
| Os05t0439400-01 | Rice | plasma membrane | 29.54 | 26.99 |
| KXG22102 | Sorghum | mitochondrion | 29.78 | 26.91 |
| CDX84587 | Canola | cytosol | 26.63 | 26.89 |
| CDX78096 | Canola | cytosol | 25.18 | 26.74 |
| CDX84168 | Canola | cytosol | 26.15 | 26.6 |
| CDX75084 | Canola | cytosol | 26.15 | 26.6 |
| CDX79645 | Canola | cytosol | 26.15 | 26.47 |
| CDY40422 | Canola | cytosol | 26.39 | 26.46 |
| CDY32070 | Canola | cytosol | 26.39 | 26.46 |
| Zm00001d038280_P001 | Maize | cytosol | 28.81 | 26.33 |
| CDY59599 | Canola | cytosol | 25.91 | 26.16 |
| CDX95337 | Canola | cytosol | 25.67 | 25.92 |
| TraesCS1B01G284200.1 | Wheat | mitochondrion | 28.09 | 25.61 |
| CDY23218 | Canola | cytosol | 24.46 | 25.51 |
| TraesCS1D01G274600.1 | Wheat | mitochondrion | 27.84 | 25.39 |
| HORVU1Hr1G074180.1 | Barley | mitochondrion, plastid | 27.6 | 25.17 |
| TraesCS1A01G274800.1 | Wheat | mitochondrion | 27.6 | 25.17 |
| CDY50158 | Canola | cytosol | 24.94 | 24.7 |
| CDX95458 | Canola | cytosol | 24.94 | 24.7 |
| CDY27655 | Canola | mitochondrion | 26.15 | 24.66 |
| CDX92328 | Canola | cytosol | 24.94 | 24.35 |
| CDX99233 | Canola | cytosol, peroxisome, plastid | 24.7 | 24.23 |
| CDX99694 | Canola | mitochondrion | 25.67 | 24.2 |
| CDY16513 | Canola | cytosol | 23.73 | 23.17 |
| CDY59286 | Canola | cytosol | 23.73 | 23.17 |
| CDY47911 | Canola | cytosol | 23.24 | 22.75 |
| CDY51529 | Canola | mitochondrion | 20.58 | 22.67 |
| CDX83098 | Canola | cytosol | 24.21 | 22.57 |
| CDY53920 | Canola | cytosol | 23.73 | 22.48 |
| CDY67531 | Canola | cytosol | 24.21 | 22.37 |
| CDY53333 | Canola | cytosol | 24.21 | 22.37 |
| CDY50319 | Canola | cytosol | 23.0 | 22.25 |
| CDY16432 | Canola | cytosol | 23.0 | 22.2 |
| CDY18670 | Canola | cytosol | 23.49 | 21.9 |
| CDY28714 | Canola | mitochondrion | 19.85 | 21.87 |
| CDX92016 | Canola | mitochondrion | 19.37 | 21.74 |
| CDY69247 | Canola | cytosol | 23.24 | 21.67 |
| CDX74232 | Canola | cytosol, extracellular, mitochondrion, plastid | 19.13 | 21.47 |
| CDX73849 | Canola | cytosol | 24.21 | 21.41 |
| CDY01063 | Canola | cytosol | 22.28 | 20.91 |
| CDY08490 | Canola | cytosol | 21.79 | 20.36 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | GO:A0A078DTN7 | InterPro:ARM-like | InterPro:ARM-type_fold |
| EnsemblPlants:CDX92262 | ProteinID:CDX92262 | ProteinID:CDX92262.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00153982001 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF20 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EE1968 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g21450D
Coordinates
chrLK031871:-:1135080..1136438
Molecular Weight (calculated)
45494.6 Da
IEP (calculated)
7.659
GRAVY (calculated)
-0.024
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRDETETYI TVPTFFKCPI SLDVMRSPVS LSTGVTYDRP SIQRWLDGGN NTCPATMQIL KSKDLVPNLT LQRLIKAWSD SVGSSPAASS PDPASARGIP
101: TVEEVNESLM RLSQEKDDEI RLEILTRIVR FVKDSEANRE FLSGREDLVP MLLAILAIKI LDSIIKKCNE GDRERLSNLM LLTNGGDCLT AILLAIQRGD
201: LESKIEAVSV LEVIASHDAK SKMMIAEREG ILTELIKSIS TESDPNLIEA SLSFLITISK SKRVRSKLIA AKTITRIKDI LLTEETISVA VTEKSLKLLE
301: ILSSKREGRS EICGGNGDCV EGVVKKMLKV STTATEHAVT ILWCLCHVFK EDKTVEETVE RSNGVTKLLV VIQSNCSPMV RQMAKDLIKV LKVKSSASAL
401: AAYQTKTTHI MPF
101: TVEEVNESLM RLSQEKDDEI RLEILTRIVR FVKDSEANRE FLSGREDLVP MLLAILAIKI LDSIIKKCNE GDRERLSNLM LLTNGGDCLT AILLAIQRGD
201: LESKIEAVSV LEVIASHDAK SKMMIAEREG ILTELIKSIS TESDPNLIEA SLSFLITISK SKRVRSKLIA AKTITRIKDI LLTEETISVA VTEKSLKLLE
301: ILSSKREGRS EICGGNGDCV EGVVKKMLKV STTATEHAVT ILWCLCHVFK EDKTVEETVE RSNGVTKLLV VIQSNCSPMV RQMAKDLIKV LKVKSSASAL
401: AAYQTKTTHI MPF
001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF
Arabidopsis Description
PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.