Factsheet for Zm00001d025379_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

mitochondrion 3
peroxisome 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005332_P001
Zm00001d018144_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	Zm00001d005332_P001	AT4G33945.1	21798944
AT5G09800.1	Zm00001d018144_P003	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU81548	Sorghum	mitochondrion	90.32	89.71
TraesCS2B01G315100.1	Wheat	cytosol	80.41	80.95
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	80.18	80.73
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	79.95	80.5
Os04t0418500-01	Rice	plastid	77.93	76.72
Zm00001d016719_P001	Maize	cytosol	66.22	68.53
HORVU2Hr1G074130.1	Barley	plastid	79.73	68.34
GSMUA_Achr8P30420_001	Banana	mitochondrion	41.89	68.13
Zm00001d050689_P001	Maize	cytosol	65.09	67.37
GSMUA_Achr6P18140_001	Banana	cytosol	51.35	55.75
GSMUA_Achr10P...	Banana	plastid	46.62	53.91
Zm00001d019807_P001	Maize	extracellular	8.56	40.43
VIT_04s0044g00870.t01	Wine grape	cytosol	36.71	39.56
VIT_18s0166g00190.t01	Wine grape	plasma membrane	34.68	38.5
KRH53869	Soybean	cytosol	36.04	38.37
PGSC0003DMT400002079	Potato	cytosol	35.59	37.8
KRH43397	Soybean	cytosol	34.23	36.36
KRH59546	Soybean	cytosol	34.23	36.36
Solyc04g071030.1.1	Tomato	cytosol	34.91	36.3
Solyc11g005700.1.1	Tomato	cytosol	33.56	35.48
Zm00001d038280_P001	Maize	cytosol	36.04	35.4
CDX84538	Canola	cytosol	33.33	35.32
CDY08864	Canola	cytosol	33.11	35.08
Bra024318.1-P	Field mustard	cytosol	33.11	35.08
KRH08734	Soybean	mitochondrion	32.43	34.78
AT5G09800.1	Thale cress	cytosol	31.98	34.72
CDX92262	Canola	cytosol	32.21	34.62
PGSC0003DMT400065698	Potato	cytosol	32.43	34.29
AT5G64660.1	Thale cress	cytosol	32.43	34.29
KRH36899	Soybean	cytosol	28.15	33.69
AT3G18710.1	Thale cress	cytosol	31.31	33.49
CDX75980	Canola	cytosol	31.98	33.49
Bra022347.1-P	Field mustard	cytosol	31.76	33.25
KRH70331	Soybean	mitochondrion	30.18	32.92
CDX99325	Canola	cytosol	31.08	32.62
CDX82332	Canola	cytosol	30.86	32.31
Bra037568.1-P	Field mustard	cytosol	29.95	32.2
Bra001717.1-P	Field mustard	cytosol	30.63	32.08
CDY71041	Canola	cytosol	29.73	31.96
Zm00001d003624_P001	Maize	cytosol	26.35	29.25
Zm00001d050712_P001	Maize	extracellular, plastid	26.8	29.1
Zm00001d016764_P001	Maize	extracellular	27.25	28.95
Zm00001d042738_P001	Maize	cytosol	26.35	28.68
Zm00001d044734_P001	Maize	mitochondrion	27.03	27.15
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	23.87	27.04
Zm00001d028294_P001	Maize	cytosol	27.48	26.58
Zm00001d048008_P001	Maize	cytosol	27.48	26.35
Zm00001d003745_P001	Maize	nucleus	26.58	26.34
Zm00001d016730_P001	Maize	cytosol	24.77	25.23
Zm00001d026040_P001	Maize	cytosol	22.52	24.45
Zm00001d017671_P001	Maize	cytosol	22.97	24.0
Zm00001d002498_P001	Maize	cytosol	22.3	23.86
Zm00001d028374_P001	Maize	mitochondrion	23.65	23.49
Zm00001d017976_P001	Maize	mitochondrion	23.65	23.23
Zm00001d030251_P001	Maize	cytosol	22.07	22.07
Zm00001d000044_P001	Maize	cytosol	9.91	19.05
Zm00001d023480_P001	Maize	cytosol	20.5	16.28

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100284248	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:AQK43636.1	InterPro:ARM-like
InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K7TP91	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF12	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000221C525
InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d025379	EnsemblPlants:Zm00001d025379_P001	EnsemblPlants:Zm00001d025379_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Photoperiod responsive protein

Coordinates

chr10:+:116471862..116473196

Molecular Weight (calculated)

45685.8 Da

IEP (calculated)

7.228

GRAVY (calculated)

0.136

Length

444 amino acids

Sequence
(BLAST)

001: MVRKETAMRL PPQHQGLEVK IPSFFRCPIS LDVMRSPVSL CTGVTYDRAS IQQWLDSGNT TCPATMLPLP STDLVPNLTL RSLIAHWAAS AASCSPTAAG
101: GAGVADSSSA RTSSPASLVR QVASSGVDPS PALRELAAYL SDDDVDDFEK NALVGAGRAA ETVASVLRRR AEETGVEGVE AATRVLALIL ASDGIDDSNK
201: KRVATGLAAD AAASTASLAR VMRGGSDLEA RIDAAKLAEL LLANAAGEAK AAATKSSELL AELVRLVGTV DETGALDRNA VDAGLSCLAA ICGSCRAARG
301: EMVRLGAVPA AVRALRASTE SGASAKALRV LESAVGCAEG RAALCANAED AIPAVVGKMM KAGRDGAEAA VAVLWAVCHR YQDRRAADAA AAAEGGLTRL
401: LLLMQSGCSP AARQMALELL KIYRVNAKSC LAGYDSKTTH IMPF

Best Arabidopsis Sequence Match ( AT3G18710.1 )
(BLAST)

001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF

Arabidopsis Description

PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.