Factsheet for Zm00001d042738_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010602_P001	golgi
Zm00001d038447_P001	golgi
Zm00001d043015_P001	golgi
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT2G35930.1	Zm00001d052194_P001	AT4G25200.1	21798944
AT3G52450.1	Zm00001d010602_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d038447_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d043015_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d010602_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d038447_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d043015_P001	AT1G07000.1	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03937	Sorghum	plastid	93.63	93.63
Os01t0865700-00	Rice	plastid	76.72	76.9
HORVU3Hr1G083500.1	Barley	cytosol	77.21	76.27
TraesCS3D01G370000.1	Wheat	cytosol	77.94	76.08
TraesCS3B01G409400.1	Wheat	cytosol	77.7	76.02
TraesCS3A01G376900.1	Wheat	cytosol	77.7	75.84
GSMUA_Achr7P03220_001	Banana	cytosol	41.67	54.84
GSMUA_Achr5P01000_001	Banana	cytosol	43.63	50.14
Solyc01g007030.2.1	Tomato	cytosol	24.02	46.45
PGSC0003DMT400055045	Potato	cytosol	24.02	46.45
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	43.38	45.15
Zm00001d016730_P001	Maize	cytosol	47.79	44.72
KRH22633	Soybean	cytosol, nucleus	43.63	44.17
AT2G35930.1	Thale cress	cytosol	43.87	43.55
CDX95337	Canola	cytosol	43.63	43.52
CDX79645	Canola	cytosol	43.38	43.38
CDX75084	Canola	cytosol	43.14	43.35
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	43.63	43.31
CDX78096	Canola	cytosol	41.18	43.19
KRH26691	Soybean	cytosol	40.93	43.15
CDX84168	Canola	cytosol	42.89	43.1
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	43.38	43.07
Bra005309.1-P	Field mustard	cytosol	40.69	42.89
Solyc11g068920.1.1	Tomato	cytosol	42.4	42.82
Bra023044.1-P	Field mustard	cytosol	42.89	42.79
CDX84587	Canola	cytosol	42.89	42.79
CDY32070	Canola	cytosol	43.14	42.72
CDY59599	Canola	cytosol	42.65	42.54
VIT_06s0009g00320.t01	Wine grape	cytosol	43.14	42.51
CDY40422	Canola	cytosol	42.89	42.48
Bra017278.1-P	Field mustard	cytosol	42.89	42.48
PGSC0003DMT400050493	Potato	cytosol	41.67	42.08
CDY23218	Canola	cytosol	40.69	41.92
Bra012803.1-P	Field mustard	cytosol	42.65	41.13
KRG96257	Soybean	cytosol	42.16	41.05
KRH25324	Soybean	cytosol	36.52	41.05
KRH68014	Soybean	cytosol	42.16	40.95
KRG96268	Soybean	cytosol	41.91	40.81
Bra033430.1-P	Field mustard	cytosol	42.4	40.8
KRH32856	Soybean	cytosol	41.91	40.71
KRH72176	Soybean	cytosol	41.42	40.43
Zm00001d003745_P001	Maize	nucleus	44.36	40.4
AT3G52450.1	Thale cress	cytosol	42.89	40.23
KRH35744	Soybean	cytosol	41.18	40.1
Bra006925.1-P	Field mustard	cytosol	42.65	40.0
Solyc01g009330.1.1	Tomato	cytosol	41.42	39.67
PGSC0003DMT400054949	Potato	cytosol	38.97	39.16
Solyc01g007020.2.1	Tomato	cytosol	38.97	38.97
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	38.97	38.88
PGSC0003DMT400055050	Potato	cytosol	37.25	38.78
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	38.48	38.67
PGSC0003DMT400054947	Potato	cytosol	28.43	38.41
PGSC0003DMT400055051	Potato	cytosol	37.01	38.32
Zm00001d019807_P001	Maize	extracellular	8.82	38.3
Solyc01g007010.2.1	Tomato	cytosol	37.99	37.99
PGSC0003DMT400038197	Potato	cytosol	40.93	36.78
Zm00001d026040_P001	Maize	cytosol	33.09	33.01
Zm00001d002498_P001	Maize	cytosol	33.09	32.53
PGSC0003DMT400054948	Potato	cytosol	22.55	32.28
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	13.48	30.73
Zm00001d017671_P001	Maize	cytosol	31.86	30.59
Zm00001d044734_P001	Maize	mitochondrion	32.11	29.64
Zm00001d050712_P001	Maize	extracellular, plastid	29.17	29.1
Zm00001d016764_P001	Maize	extracellular	29.41	28.71
GSMUA_Achr9P29630_001	Banana	cytosol	43.14	28.48
Zm00001d016719_P001	Maize	cytosol	29.9	28.44
Zm00001d030251_P001	Maize	cytosol	29.9	27.48
Zm00001d017976_P001	Maize	mitochondrion	30.39	27.43
Zm00001d003624_P001	Maize	cytosol	26.72	27.25
Zm00001d050689_P001	Maize	cytosol	28.43	27.04
Zm00001d028294_P001	Maize	cytosol	30.15	26.8
Zm00001d028374_P001	Maize	mitochondrion	28.92	26.4
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	28.68	26.35
Zm00001d048008_P001	Maize	cytosol	29.66	26.13
Zm00001d023480_P001	Maize	cytosol	32.6	23.79
Zm00001d038280_P001	Maize	cytosol	25.98	23.45
Zm00001d000044_P001	Maize	cytosol	12.5	22.08

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6N6H8	InterPro:ARM-type_fold	InterPro:Armadillo	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0016874
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR013083	ProteinID:ONM36202.1	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF66	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000221B0C3	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d042738	EnsemblPlants:Zm00001d042738_P001	EnsemblPlants:Zm00001d042738_T001
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase PUB23

Coordinates

chr3:+:178550428..178559208

Molecular Weight (calculated)

43304.6 Da

IEP (calculated)

8.429

GRAVY (calculated)

0.192

Length

408 amino acids

Sequence
(BLAST)

001: MASAPGEVPS HFLCPISLQL MREPVTLPTG ISYDRAAISR WLATPAPAGG RTCPVTRVPL PPQPQLTPNH TLRRLIHAWL ASLSPEAEVN EDVAALRGPV
101: PGAEVVVALL SDAAGAQVEA LKRLRELVAE CEDSRAVLES QDGVFDALSR VVSSADACST AREEAVGLLA SLRIPEPELA GVVARHSNLG DALTAVLRSS
201: NLKSRANAAL LVRSLSEAAW PAWVIGLSQE LLAEVVRVVR DRVSTQATKA ALHALAALCP YGLTRVKIVG VGAVPAIVDL LLDDPERRVN ELALVALDRL
301: CTCAEGRAEL VAHAAGLAVV GKKALRVSET ASERAVRVLR SVARHAATPA VLQEMVESGV VAKLCAALWS QQCGLRTKQK AHEVLKLHSR TWRSSPCLSP
401: KFLGLYPS

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.