Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G370000.1 | Wheat | cytosol | 97.85 | 97.85 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 96.89 | 97.12 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 95.69 | 96.85 |
| Os01t0865700-00 | Rice | plastid | 84.45 | 86.73 |
| EES03937 | Sorghum | plastid | 77.99 | 79.9 |
| Zm00001d042738_P001 | Maize | cytosol | 75.84 | 77.7 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 41.87 | 56.45 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 45.69 | 53.8 |
| Solyc01g007030.2.1 | Tomato | cytosol | 24.88 | 49.29 |
| PGSC0003DMT400055045 | Potato | cytosol | 24.88 | 49.29 |
| KRH22633 | Soybean | cytosol, nucleus | 44.5 | 46.15 |
| KRH26691 | Soybean | cytosol | 41.87 | 45.22 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 43.78 | 44.53 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 43.54 | 44.28 |
| CDX75084 | Canola | cytosol | 42.82 | 44.09 |
| CDX95337 | Canola | cytosol | 43.06 | 44.01 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 43.54 | 43.96 |
| CDX78096 | Canola | cytosol | 40.91 | 43.96 |
| CDX79645 | Canola | cytosol | 42.82 | 43.87 |
| Solyc11g068920.1.1 | Tomato | cytosol | 42.34 | 43.81 |
| KRH25324 | Soybean | cytosol | 38.04 | 43.8 |
| AT2G35930.1 | Thale cress | cytosol | 43.06 | 43.8 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 44.02 | 43.6 |
| PGSC0003DMT400050493 | Potato | cytosol | 42.11 | 43.56 |
| Bra005309.1-P | Field mustard | cytosol | 40.19 | 43.41 |
| CDX84587 | Canola | cytosol | 42.34 | 43.28 |
| Bra023044.1-P | Field mustard | cytosol | 42.34 | 43.28 |
| CDY32070 | Canola | cytosol | 42.58 | 43.2 |
| CDX84168 | Canola | cytosol | 41.87 | 43.1 |
| KRH32856 | Soybean | cytosol | 43.3 | 43.1 |
| KRH68014 | Soybean | cytosol | 43.3 | 43.1 |
| CDY59599 | Canola | cytosol | 42.11 | 43.03 |
| Bra017278.1-P | Field mustard | cytosol | 42.34 | 42.96 |
| CDY40422 | Canola | cytosol | 42.34 | 42.96 |
| CDY23218 | Canola | cytosol | 40.67 | 42.93 |
| Solyc01g009330.1.1 | Tomato | cytosol | 43.54 | 42.72 |
| KRH35744 | Soybean | cytosol | 42.82 | 42.72 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 43.06 | 42.65 |
| KRH72176 | Soybean | cytosol | 42.58 | 42.58 |
| KRG96257 | Soybean | cytosol | 42.58 | 42.48 |
| KRG96268 | Soybean | cytosol | 42.34 | 42.24 |
| PGSC0003DMT400054949 | Potato | cytosol | 40.67 | 41.87 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 40.91 | 41.81 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 43.06 | 41.76 |
| Bra012803.1-P | Field mustard | cytosol | 42.11 | 41.61 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 40.19 | 41.38 |
| PGSC0003DMT400055050 | Potato | cytosol | 38.76 | 41.33 |
| PGSC0003DMT400055051 | Potato | cytosol | 38.76 | 41.12 |
| Bra033430.1-P | Field mustard | cytosol | 41.63 | 41.04 |
| Solyc01g007020.2.1 | Tomato | cytosol | 39.95 | 40.93 |
| AT3G52450.1 | Thale cress | cytosol | 42.58 | 40.92 |
| Bra006925.1-P | Field mustard | cytosol | 42.34 | 40.69 |
| Solyc01g007010.2.1 | Tomato | cytosol | 39.23 | 40.2 |
| PGSC0003DMT400038197 | Potato | cytosol | 43.3 | 39.87 |
| PGSC0003DMT400054947 | Potato | cytosol | 28.71 | 39.74 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 36.6 | 35.42 |
| PGSC0003DMT400054948 | Potato | cytosol | 23.92 | 35.09 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 14.11 | 32.96 |
| TraesCS6A01G263700.1 | Wheat | cytosol | 31.82 | 30.93 |
| TraesCS2A01G450300.1 | Wheat | cytosol | 30.62 | 30.7 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 43.78 | 29.61 |
| TraesCS6A01G256700.1 | Wheat | extracellular | 28.23 | 28.99 |
| TraesCS7A01G399900.1 | Wheat | extracellular, vacuole | 26.55 | 28.98 |
| TraesCS6A01G312600.1 | Wheat | mitochondrion | 31.34 | 28.79 |
| TraesCS2A01G307000.1 | Wheat | cytosol | 26.08 | 28.17 |
| TraesCS2A01G298600.1 | Wheat | cytosol, mitochondrion, plastid | 29.43 | 27.89 |
| TraesCS4A01G060800.1 | Wheat | cytosol | 28.95 | 26.36 |
| TraesCS5A01G088600.1 | Wheat | cytosol | 19.86 | 24.27 |
| TraesCS1A01G274800.1 | Wheat | mitochondrion | 24.88 | 22.96 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:Armadillo |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | InterPro:IPR000225 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | PFAM:PF04564 |
| PFscan:PS50176 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF66 | SMART:SM00504 | SUPFAM:SSF48371 |
| SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS3A01G376900 | EnsemblPlants:TraesCS3A01G376900.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | TIGR:cd16664 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:625554741..625555997
Molecular Weight (calculated)
44374.1 Da
IEP (calculated)
8.817
GRAVY (calculated)
0.203
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAMAAPGA PPAEVPSYFL CPISLQIMRD PVTLPTGISY DRAAISRWLA ASAAPAACSA SQRTCPVTRQ PLEPELQLTP NHTLRRLIGS WVASVSPGSD
101: VEGEVAALRP VRRDELASLL SDAAAAQVGA LRKLGELVAE CEDTRAMLES QDGVFDALSR VLTGASACST AREEAVGVLA SLRIPEQELV RVVSRHGNLA
201: ESLTAVLRSS NLQSRAQAVR LVRSLADVSV PAWVIGLNQE LLAEVIRVVR DRVSTRATKA ALHALSALCP YGRNRVKIVG AGAVPALVEL LLDEPERRVC
301: ELALAVLDRL CTCAEGRAEL VAHAAGVAVV GKKVLRVSDA ASERAVRVLR SVARHAATPA VLQEMAHAGV VGKLCLALRS ELCGVKTKEK AHEVLKLHSR
401: IWRSSPCLSP KFLALYPS
101: VEGEVAALRP VRRDELASLL SDAAAAQVGA LRKLGELVAE CEDTRAMLES QDGVFDALSR VLTGASACST AREEAVGVLA SLRIPEQELV RVVSRHGNLA
201: ESLTAVLRSS NLQSRAQAVR LVRSLADVSV PAWVIGLNQE LLAEVIRVVR DRVSTRATKA ALHALSALCP YGRNRVKIVG AGAVPALVEL LLDEPERRVC
301: ELALAVLDRL CTCAEGRAEL VAHAAGVAVV GKKVLRVSDA ASERAVRVLR SVARHAATPA VLQEMAHAGV VGKLCLALRS ELCGVKTKEK AHEVLKLHSR
401: IWRSSPCLSP KFLALYPS
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.