Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G209000.1 | Wheat | cytosol | 94.68 | 96.69 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 95.37 | 95.15 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 91.44 | 91.22 |
| Os12t0161100-00 | Rice | cytosol | 62.73 | 61.73 |
| KXG23010 | Sorghum | cytosol | 64.35 | 61.23 |
| Zm00001d023480_P001 | Maize | cytosol | 56.48 | 43.65 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 29.86 | 41.61 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 31.02 | 37.75 |
| PGSC0003DMT400055045 | Potato | cytosol | 18.29 | 37.44 |
| Solyc01g007030.2.1 | Tomato | cytosol | 18.29 | 37.44 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 35.42 | 36.6 |
| KRH22633 | Soybean | cytosol, nucleus | 33.8 | 36.23 |
| KRH26691 | Soybean | cytosol | 30.79 | 34.37 |
| CDY23218 | Canola | cytosol | 31.02 | 33.84 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 31.94 | 33.74 |
| CDX95337 | Canola | cytosol | 31.94 | 33.74 |
| CDX78096 | Canola | cytosol | 30.32 | 33.68 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 31.71 | 33.33 |
| Solyc11g068920.1.1 | Tomato | cytosol | 31.02 | 33.17 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 31.71 | 33.09 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 31.48 | 33.09 |
| KRH72176 | Soybean | cytosol | 31.94 | 33.01 |
| PGSC0003DMT400054949 | Potato | cytosol | 31.02 | 33.0 |
| CDX75084 | Canola | cytosol | 31.02 | 33.0 |
| PGSC0003DMT400050493 | Potato | cytosol | 30.79 | 32.92 |
| Solyc01g007010.2.1 | Tomato | cytosol | 31.02 | 32.84 |
| Bra017278.1-P | Field mustard | cytosol | 31.25 | 32.77 |
| CDY40422 | Canola | cytosol | 31.25 | 32.77 |
| CDY32070 | Canola | cytosol | 31.25 | 32.77 |
| CDY59599 | Canola | cytosol | 31.02 | 32.76 |
| CDX84168 | Canola | cytosol | 30.79 | 32.76 |
| PGSC0003DMT400055051 | Potato | cytosol | 29.86 | 32.74 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 31.94 | 32.7 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 31.94 | 32.7 |
| PGSC0003DMT400055050 | Potato | cytosol | 29.63 | 32.65 |
| KRH32856 | Soybean | cytosol | 31.71 | 32.62 |
| Bra005309.1-P | Field mustard | cytosol | 29.17 | 32.56 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 30.56 | 32.51 |
| KRH25324 | Soybean | cytosol | 27.08 | 32.23 |
| Solyc01g009330.1.1 | Tomato | cytosol | 31.71 | 32.16 |
| KRH68014 | Soybean | cytosol | 31.25 | 32.14 |
| AT2G35930.1 | Thale cress | cytosol | 30.56 | 32.12 |
| Bra023044.1-P | Field mustard | cytosol | 30.32 | 32.03 |
| CDX84587 | Canola | cytosol | 30.32 | 32.03 |
| Solyc01g007020.2.1 | Tomato | cytosol | 29.86 | 31.62 |
| CDX79645 | Canola | cytosol | 29.86 | 31.62 |
| Bra033430.1-P | Field mustard | cytosol | 31.02 | 31.6 |
| KRG96257 | Soybean | cytosol | 30.56 | 31.5 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 12.96 | 31.28 |
| KRG96268 | Soybean | cytosol | 30.32 | 31.26 |
| KRH35744 | Soybean | cytosol | 30.32 | 31.26 |
| Bra006925.1-P | Field mustard | cytosol | 31.02 | 30.8 |
| Bra012803.1-P | Field mustard | cytosol | 30.09 | 30.73 |
| AT3G52450.1 | Thale cress | cytosol | 30.79 | 30.57 |
| PGSC0003DMT400054947 | Potato | cytosol | 21.06 | 30.13 |
| TraesCS2A01G450300.1 | Wheat | cytosol | 28.94 | 29.98 |
| PGSC0003DMT400038197 | Potato | cytosol | 31.48 | 29.96 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 29.86 | 29.93 |
| TraesCS6A01G263700.1 | Wheat | cytosol | 28.47 | 28.6 |
| PGSC0003DMT400054948 | Potato | cytosol | 18.29 | 27.72 |
| TraesCS7A01G399900.1 | Wheat | extracellular, vacuole | 21.99 | 24.8 |
| TraesCS6A01G256700.1 | Wheat | extracellular | 22.69 | 24.08 |
| TraesCS6A01G312600.1 | Wheat | mitochondrion | 25.23 | 23.96 |
| TraesCS4A01G060800.1 | Wheat | cytosol | 24.31 | 22.88 |
| TraesCS2A01G307000.1 | Wheat | cytosol | 20.37 | 22.74 |
| TraesCS2A01G298600.1 | Wheat | cytosol, mitochondrion, plastid | 22.45 | 22.0 |
| TraesCS5A01G088600.1 | Wheat | cytosol | 17.36 | 21.93 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 30.79 | 21.52 |
| TraesCS1A01G274800.1 | Wheat | mitochondrion | 22.22 | 21.19 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 |
| PANTHER:PTHR22849 | PANTHER:PTHR22849:SF30 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS6A01G176800 |
| EnsemblPlants:TraesCS6A01G176800.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | TIGR:cd16664 | SEG:seg | : |
Description
No Description!
Coordinates
chr6A:-:195294064..195295362
Molecular Weight (calculated)
45607.3 Da
IEP (calculated)
8.117
GRAVY (calculated)
0.205
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSLACVHME TSGGGTAQHH FVCPISLQPM QDPVTAPTGI SYDRRAIERW LANGHATCPV TGRQLSLTDL TPNHTLRRLI LSWHPASKVA PDVAPTLEPD
101: DPEVVVLVAK VMSPTSCPTA DVLCEAAASA AVSITARRCM VRAGVQWRVL RLFSSCGKTS SRAVMPTVQA CLALLDALDV SADELRPLLS GNHDLVDALT
201: HVLVMLENGT YSGGGGNTTR DSAVRLLDSV IESADVVLLE RLRPELFRAV TAVVRDRTVS PGATRAALRA LLNACPSGDG KNRVLIAEAG AAHEAIELEL
301: SSWPSSPSAG KSRRVTELVM ALLARLCSCA EGRAAVVAHP AGIALVAKRA LRVSAATDTS AVRVLAAVCG RAASPEVVRE MARVGAVGKL CCVLQADCDR
401: DVKETAKAVL RMHSGVWCGS PCVSAYLLSR YL
101: DPEVVVLVAK VMSPTSCPTA DVLCEAAASA AVSITARRCM VRAGVQWRVL RLFSSCGKTS SRAVMPTVQA CLALLDALDV SADELRPLLS GNHDLVDALT
201: HVLVMLENGT YSGGGGNTTR DSAVRLLDSV IESADVVLLE RLRPELFRAV TAVVRDRTVS PGATRAALRA LLNACPSGDG KNRVLIAEAG AAHEAIELEL
301: SSWPSSPSAG KSRRVTELVM ALLARLCSCA EGRAAVVAHP AGIALVAKRA LRVSAATDTS AVRVLAAVCG RAASPEVVRE MARVGAVGKL CCVLQADCDR
401: DVKETAKAVL RMHSGVWCGS PCVSAYLLSR YL
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.