Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G296100.1 | Wheat | cytosol | 97.68 | 97.68 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 96.75 | 96.75 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 96.29 | 96.29 |
| Zm00001d003745_P001 | Maize | nucleus | 71.93 | 69.2 |
| KXG26241 | Sorghum | cytosol | 73.78 | 68.83 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 61.02 | 62.32 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 61.02 | 62.32 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 37.12 | 51.61 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 38.05 | 46.2 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 43.85 | 45.99 |
| Solyc01g007030.2.1 | Tomato | cytosol | 22.51 | 45.97 |
| PGSC0003DMT400055045 | Potato | cytosol | 22.51 | 45.97 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 43.62 | 45.74 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 43.16 | 45.48 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 43.39 | 45.17 |
| Solyc01g007020.2.1 | Tomato | cytosol | 42.46 | 44.85 |
| CDX78096 | Canola | cytosol | 40.37 | 44.73 |
| PGSC0003DMT400054949 | Potato | cytosol | 42.0 | 44.58 |
| CDX95337 | Canola | cytosol | 42.23 | 44.5 |
| CDY59599 | Canola | cytosol | 42.0 | 44.25 |
| CDX75084 | Canola | cytosol | 41.53 | 44.09 |
| PGSC0003DMT400055050 | Potato | cytosol | 39.91 | 43.88 |
| CDX84168 | Canola | cytosol | 41.3 | 43.84 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 41.3 | 43.84 |
| Bra023044.1-P | Field mustard | cytosol | 41.53 | 43.77 |
| CDY23218 | Canola | cytosol | 40.14 | 43.69 |
| KRH68014 | Soybean | cytosol | 42.46 | 43.57 |
| Solyc11g068920.1.1 | Tomato | cytosol | 40.84 | 43.56 |
| CDX84587 | Canola | cytosol | 41.3 | 43.52 |
| Bra005309.1-P | Field mustard | cytosol | 38.98 | 43.41 |
| PGSC0003DMT400055051 | Potato | cytosol | 39.68 | 43.4 |
| CDX79645 | Canola | cytosol | 41.07 | 43.38 |
| Solyc01g007010.2.1 | Tomato | cytosol | 41.07 | 43.38 |
| PGSC0003DMT400050493 | Potato | cytosol | 40.6 | 43.32 |
| CDY32070 | Canola | cytosol | 41.3 | 43.2 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 41.76 | 43.06 |
| CDY40422 | Canola | cytosol | 41.07 | 42.96 |
| Bra017278.1-P | Field mustard | cytosol | 41.07 | 42.96 |
| KRH35744 | Soybean | cytosol | 41.53 | 42.72 |
| KRG96257 | Soybean | cytosol | 41.53 | 42.72 |
| KRG96268 | Soybean | cytosol | 41.3 | 42.48 |
| AT2G35930.1 | Thale cress | cytosol | 40.37 | 42.34 |
| Bra033430.1-P | Field mustard | cytosol | 41.53 | 42.22 |
| Bra012803.1-P | Field mustard | cytosol | 41.3 | 42.08 |
| KRH32856 | Soybean | cytosol | 40.84 | 41.9 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 17.4 | 41.9 |
| KRH72176 | Soybean | cytosol | 40.6 | 41.87 |
| Bra006925.1-P | Field mustard | cytosol | 42.23 | 41.84 |
| PGSC0003DMT400054948 | Potato | cytosol | 27.61 | 41.75 |
| KRH22633 | Soybean | cytosol, nucleus | 38.75 | 41.44 |
| Solyc01g009330.1.1 | Tomato | cytosol | 40.84 | 41.31 |
| PGSC0003DMT400054947 | Potato | cytosol | 28.77 | 41.06 |
| AT3G52450.1 | Thale cress | cytosol | 41.3 | 40.92 |
| KRH25324 | Soybean | cytosol | 34.11 | 40.5 |
| KRH26691 | Soybean | cytosol | 35.96 | 40.05 |
| PGSC0003DMT400038197 | Potato | cytosol | 42.0 | 39.87 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 29.93 | 29.86 |
| TraesCS6A01G256700.1 | Wheat | extracellular | 27.61 | 29.24 |
| TraesCS2A01G450300.1 | Wheat | cytosol | 27.84 | 28.78 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 40.84 | 28.48 |
| TraesCS6A01G263700.1 | Wheat | cytosol | 27.84 | 27.91 |
| TraesCS6A01G312600.1 | Wheat | mitochondrion | 29.23 | 27.69 |
| TraesCS2A01G307000.1 | Wheat | cytosol | 23.43 | 26.1 |
| TraesCS7A01G399900.1 | Wheat | extracellular, vacuole | 22.51 | 25.33 |
| TraesCS4A01G060800.1 | Wheat | cytosol | 25.52 | 23.97 |
| TraesCS5A01G088600.1 | Wheat | cytosol | 18.33 | 23.1 |
| TraesCS2A01G298600.1 | Wheat | cytosol, mitochondrion, plastid | 23.2 | 22.68 |
| TraesCS1A01G274800.1 | Wheat | mitochondrion | 19.95 | 18.98 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF49 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS2A01G298000 | EnsemblPlants:TraesCS2A01G298000.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd16664 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:513093349..513094644
Molecular Weight (calculated)
46584.4 Da
IEP (calculated)
7.460
GRAVY (calculated)
0.020
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGLPAQVEV PSYFLCPISM EIMRDPVTLS SGITYDRESI ERWVFTDGHG ECPMTKQKLG AADREPTPNH TLRRLIQGWC AVHAVERFPT PRAPIDAARV
101: ETIVDAARRG QDLLVASLRE LADIVAESDC NRRCVESTPG AVAFLVSVVK KHAADDTPKP LESQEDQMFG SVVGPPRASS PEDVALSILY SLRLSEGSWK
201: RVLERGDNFL DTMASALRRP SYLSRTHGIQ LLKAAVSEMP PAQLTSASAE LVEGVVSVVT DKLSGKAVKI ALQVLCRLCL WGRNRVKAVE AGAVGALVEL
301: LLDECYGGSK RASELAIVVM DHLCGCAEGR LELVAHPAGL AVMARAVTRV SAAGTESAVR ALHAVARHSA TPAVLQEMLA VGVVVRLLFL VQTGAAGDRP
401: RERAREMLKM HARVWRGSPC FTPQLDASYP S
101: ETIVDAARRG QDLLVASLRE LADIVAESDC NRRCVESTPG AVAFLVSVVK KHAADDTPKP LESQEDQMFG SVVGPPRASS PEDVALSILY SLRLSEGSWK
201: RVLERGDNFL DTMASALRRP SYLSRTHGIQ LLKAAVSEMP PAQLTSASAE LVEGVVSVVT DKLSGKAVKI ALQVLCRLCL WGRNRVKAVE AGAVGALVEL
301: LLDECYGGSK RASELAIVVM DHLCGCAEGR LELVAHPAGL AVMARAVTRV SAAGTESAVR ALHAVARHSA TPAVLQEMLA VGVVVRLLFL VQTGAAGDRP
401: RERAREMLKM HARVWRGSPC FTPQLDASYP S
001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
Arabidopsis Description
PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.