Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G298000.1 | Wheat | cytosol | 97.68 | 97.68 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 97.45 | 97.45 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 97.22 | 97.22 |
| Zm00001d003745_P001 | Maize | nucleus | 72.16 | 69.42 |
| KXG26241 | Sorghum | cytosol | 73.55 | 68.61 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 61.02 | 62.17 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 60.56 | 62.14 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 36.66 | 50.97 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 43.62 | 45.74 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 37.59 | 45.63 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 43.39 | 45.5 |
| PGSC0003DMT400055045 | Potato | cytosol | 22.27 | 45.5 |
| Solyc01g007030.2.1 | Tomato | cytosol | 22.27 | 45.5 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 43.16 | 45.48 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 43.16 | 44.93 |
| Solyc01g007020.2.1 | Tomato | cytosol | 42.46 | 44.85 |
| PGSC0003DMT400054949 | Potato | cytosol | 42.0 | 44.58 |
| CDX95337 | Canola | cytosol | 42.0 | 44.25 |
| CDX78096 | Canola | cytosol | 39.91 | 44.22 |
| PGSC0003DMT400055050 | Potato | cytosol | 39.91 | 43.88 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 41.3 | 43.84 |
| CDY59599 | Canola | cytosol | 41.53 | 43.77 |
| CDX75084 | Canola | cytosol | 41.07 | 43.6 |
| KRH68014 | Soybean | cytosol | 42.46 | 43.57 |
| Bra023044.1-P | Field mustard | cytosol | 41.3 | 43.52 |
| CDY23218 | Canola | cytosol | 39.91 | 43.43 |
| PGSC0003DMT400055051 | Potato | cytosol | 39.68 | 43.4 |
| Solyc01g007010.2.1 | Tomato | cytosol | 41.07 | 43.38 |
| CDX84168 | Canola | cytosol | 40.84 | 43.35 |
| Solyc11g068920.1.1 | Tomato | cytosol | 40.6 | 43.32 |
| CDX84587 | Canola | cytosol | 41.07 | 43.28 |
| CDX79645 | Canola | cytosol | 40.84 | 43.14 |
| PGSC0003DMT400050493 | Potato | cytosol | 40.37 | 43.07 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 41.76 | 43.06 |
| Bra005309.1-P | Field mustard | cytosol | 38.52 | 42.89 |
| KRH35744 | Soybean | cytosol | 41.53 | 42.72 |
| KRG96257 | Soybean | cytosol | 41.53 | 42.72 |
| Bra017278.1-P | Field mustard | cytosol | 40.84 | 42.72 |
| CDY40422 | Canola | cytosol | 40.84 | 42.72 |
| CDY32070 | Canola | cytosol | 40.84 | 42.72 |
| KRG96268 | Soybean | cytosol | 41.3 | 42.48 |
| PGSC0003DMT400054948 | Potato | cytosol | 27.84 | 42.11 |
| AT2G35930.1 | Thale cress | cytosol | 40.14 | 42.09 |
| Bra033430.1-P | Field mustard | cytosol | 41.3 | 41.98 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 17.4 | 41.9 |
| KRH22633 | Soybean | cytosol, nucleus | 38.98 | 41.69 |
| KRH32856 | Soybean | cytosol | 40.6 | 41.67 |
| KRH72176 | Soybean | cytosol | 40.37 | 41.63 |
| Bra012803.1-P | Field mustard | cytosol | 40.84 | 41.61 |
| Bra006925.1-P | Field mustard | cytosol | 41.76 | 41.38 |
| Solyc01g009330.1.1 | Tomato | cytosol | 40.6 | 41.08 |
| PGSC0003DMT400054947 | Potato | cytosol | 28.77 | 41.06 |
| AT3G52450.1 | Thale cress | cytosol | 41.07 | 40.69 |
| KRH26691 | Soybean | cytosol | 36.43 | 40.57 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 40.14 | 40.52 |
| KRH25324 | Soybean | cytosol | 34.11 | 40.5 |
| PGSC0003DMT400038197 | Potato | cytosol | 41.53 | 39.43 |
| TraesCS7D01G201600.1 | Wheat | mitochondrion | 30.39 | 29.64 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 29.7 | 29.56 |
| TraesCS6D01G237900.1 | Wheat | extracellular | 27.61 | 29.24 |
| TraesCS2D01G449900.1 | Wheat | cytosol | 28.31 | 29.19 |
| TraesCS6D01G292200.1 | Wheat | mitochondrion | 29.93 | 28.41 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 40.37 | 28.16 |
| TraesCS6D01G251200.1 | Wheat | cytosol | 27.61 | 27.55 |
| TraesCS4D01G229900.1 | Wheat | mitochondrion | 27.38 | 26.82 |
| TraesCS7D01G393700.1 | Wheat | extracellular, vacuole | 22.74 | 25.65 |
| TraesCS2D01G305400.1 | Wheat | cytosol | 23.67 | 25.5 |
| TraesCS4D01G237600.1 | Wheat | cytosol | 25.29 | 23.75 |
| TraesCS2D01G296700.1 | Wheat | cytosol, mitochondrion, plastid | 23.67 | 23.13 |
| TraesCS1D01G274600.1 | Wheat | mitochondrion | 19.95 | 18.98 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF49 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS2D01G296100 | EnsemblPlants:TraesCS2D01G296100.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd16664 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:378362409..378363704
Molecular Weight (calculated)
46588.4 Da
IEP (calculated)
7.250
GRAVY (calculated)
0.012
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGLPAQVEV PSYFLCPISM EIMRDPVTLS SGITYDRESI ERWVFTDGHG ECPMTKQQLG AADREPTPNH TLRRLIQGWC AVHAVERFPT PRAPIDAARV
101: ETIVDAARRG HDLLVASLRE LADIVAESDC NRRCVESTPG AVAFLVSVVK KHAADDTPKP LESQEDQMFG SVVDPPKASS PEDVALSILY SLRLSEGSWK
201: RVLERGDNFL DTMASVLRRP SYLSRTHGIQ LLKAAVSEMP PAQLTSASAE LVEGVVSVVT DKLSGKAVKI ALQVLCRLCL WGRNRVKAVE AGAVGALVEL
301: LLDECCGGSK RASELAIVVM DHLCGCAEGR LELVAHPAGL AVMARAVTRV SAAGTESAVR ALHAVARHSA TPTVLQEMLA VGVVGRLLFL VQTGAAGDRP
401: RERAREMLKM HARVWRGSPC FTPQLNAPYP S
101: ETIVDAARRG HDLLVASLRE LADIVAESDC NRRCVESTPG AVAFLVSVVK KHAADDTPKP LESQEDQMFG SVVDPPKASS PEDVALSILY SLRLSEGSWK
201: RVLERGDNFL DTMASVLRRP SYLSRTHGIQ LLKAAVSEMP PAQLTSASAE LVEGVVSVVT DKLSGKAVKI ALQVLCRLCL WGRNRVKAVE AGAVGALVEL
301: LLDECCGGSK RASELAIVVM DHLCGCAEGR LELVAHPAGL AVMARAVTRV SAAGTESAVR ALHAVARHSA TPTVLQEMLA VGVVGRLLFL VQTGAAGDRP
401: RERAREMLKM HARVWRGSPC FTPQLNAPYP S
001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
Arabidopsis Description
PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.