Factsheet for TraesCS6D01G292200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G312600.1	Wheat	mitochondrion	96.48	96.26
TraesCS6B01G342800.1	Wheat	mitochondrion	94.93	94.93
HORVU6Hr1G077120.1	Barley	plastid	91.41	81.05
Os02t0738200-01	Rice	mitochondrion	74.01	73.68
EES05563	Sorghum	mitochondrion	73.57	72.29
Zm00001d017976_P001	Maize	mitochondrion	70.7	71.02
TraesCS7D01G201600.1	Wheat	mitochondrion	60.79	62.44
GSMUA_Achr6P02470_001	Banana	mitochondrion	43.83	52.37
GSMUA_Achr7P18640_001	Banana	mitochondrion	42.51	50.92
GSMUA_Achr6P11310_001	Banana	cytosol	42.07	50.26
TraesCS4D01G229900.1	Wheat	mitochondrion	48.68	50.23
GSMUA_Achr10P...	Banana	cytosol	40.97	49.47
GSMUA_Achr11P...	Banana	mitochondrion	45.15	48.24
VIT_01s0011g06140.t01	Wine grape	mitochondrion	45.15	46.38
GSMUA_Achr3P02030_001	Banana	plastid	40.31	43.68
KRH48691	Soybean	cytosol	41.85	43.48
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	42.95	43.24
Solyc04g008100.1.1	Tomato	cytosol	42.07	43.21
Solyc01g005160.2.1	Tomato	mitochondrion	42.51	42.89
KRH30918	Soybean	mitochondrion	40.97	42.76
KRH39018	Soybean	mitochondrion	41.19	42.69
KRG97963	Soybean	mitochondrion	40.53	42.69
KRH17309	Soybean	cytosol, mitochondrion	41.19	42.6
KRH72959	Soybean	cytosol, mitochondrion	40.97	42.47
PGSC0003DMT400075778	Potato	mitochondrion	40.97	42.08
PGSC0003DMT400073836	Potato	cytosol	36.12	39.14
Solyc11g006030.1.1	Tomato	cytosol	35.9	37.91
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	33.48	34.94
Bra039752.1-P	Field mustard	cytosol	32.16	34.6
CDY16432	Canola	cytosol	32.16	34.11
Bra025442.1-P	Field mustard	mitochondrion	32.82	34.02
CDY50319	Canola	cytosol	31.72	33.72
CDY51529	Canola	mitochondrion	27.75	33.6
CDY27655	Canola	mitochondrion	32.38	33.56
CDX99694	Canola	mitochondrion	32.16	33.33
AT3G02840.1	Thale cress	mitochondrion	27.75	33.25
CDX92016	Canola	mitochondrion	26.65	32.88
CDY28714	Canola	mitochondrion	27.09	32.8
AT1G66160.1	Thale cress	cytosol	31.06	32.71
Bra040605.1-P	Field mustard	mitochondrion	26.87	32.53
Bra001067.1-P	Field mustard	mitochondrion	26.21	32.34
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	26.21	32.34
TraesCS3D01G370000.1	Wheat	cytosol	29.07	31.58
TraesCS6D01G367600.1	Wheat	cytosol	28.41	30.5
TraesCS6D01G367100.1	Wheat	cytosol	27.75	30.0
TraesCS2D01G296100.1	Wheat	cytosol	28.41	29.93
TraesCS6D01G237900.1	Wheat	extracellular	26.65	29.73
TraesCS6D01G251200.1	Wheat	cytosol	24.89	26.16
TraesCS2D01G305400.1	Wheat	cytosol	22.47	25.5
TraesCS7D01G393700.1	Wheat	extracellular, vacuole	21.37	25.39
TraesCS6D01G167300.1	Wheat	cytosol	24.01	25.17
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	24.23	24.94
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	23.35	24.82
TraesCS2D01G449900.1	Wheat	cytosol	22.69	24.64
TraesCS4D01G237600.1	Wheat	cytosol	23.57	23.31
TraesCS1D01G274600.1	Wheat	mitochondrion	22.69	22.74

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF107	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS6D01G292200	EnsemblPlants:TraesCS6D01G292200.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:402879865..402881229

Molecular Weight (calculated)

49150.9 Da

IEP (calculated)

8.253

GRAVY (calculated)

0.095

Length

454 amino acids

Sequence
(BLAST)

001: MVTPLPRFRA RAFRGAARGA PAEIPLAVRR TWQQPMLVAA ADSEPAVPTH FLCPISLDMM RDPVTAPTGI TYDRESVEGW LERGHATCPV TGRPLRLEEL
101: VPNHATRRVI QEWCVANRGL GVERVPTPRV PVSAFDASEL LEAVCAAARR GDGPRCRELV ARARALGKES ERNRRCFVSA SAARALSSTY CHLAGQRVVP
201: ATALEEILAA MVVFLPLDEE SRRHIASPAA LESVVSILSH SELLARVSAV VVLREIASSS DRQCLEAMAK TTGIYAALVK LLEKPVSPQA TKAALVTAYY
301: LVMHTELAAS RLVDLGAVRL VLELLVDADK GATEKALALL DSLLLTCKGR DEAYAQALAV PVIVKKMQHV SDMATEFAVS ALWRLCKNSP AEGDGCKAEA
401: LQVGAFQKLL LLLQVGCEGA TRERASELLR ILNGSRDGAE CIDTLDFKAL KRPF

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [cytosol,nucleus,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.