Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G209000.1 | Wheat | cytosol | 93.76 | 95.98 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 95.15 | 95.37 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 90.99 | 90.99 |
| Os12t0161100-00 | Rice | cytosol | 62.82 | 61.96 |
| KXG23010 | Sorghum | cytosol | 64.43 | 61.45 |
| Zm00001d023480_P001 | Maize | cytosol | 56.58 | 43.83 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 29.1 | 40.65 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 31.64 | 38.59 |
| Solyc01g007030.2.1 | Tomato | cytosol | 18.71 | 38.39 |
| PGSC0003DMT400055045 | Potato | cytosol | 18.71 | 38.39 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 35.57 | 36.84 |
| KRH22633 | Soybean | cytosol, nucleus | 33.72 | 36.23 |
| KRH26691 | Soybean | cytosol | 30.72 | 34.37 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 32.1 | 33.99 |
| CDY23218 | Canola | cytosol | 30.72 | 33.59 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 31.87 | 33.58 |
| CDX95337 | Canola | cytosol | 31.64 | 33.5 |
| CDX78096 | Canola | cytosol | 30.02 | 33.42 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 31.87 | 33.33 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 31.64 | 33.33 |
| PGSC0003DMT400054949 | Potato | cytosol | 31.18 | 33.25 |
| Solyc01g007010.2.1 | Tomato | cytosol | 31.18 | 33.09 |
| KRH72176 | Soybean | cytosol | 31.87 | 33.01 |
| PGSC0003DMT400055051 | Potato | cytosol | 30.02 | 32.99 |
| PGSC0003DMT400055050 | Potato | cytosol | 29.79 | 32.91 |
| KRH32856 | Soybean | cytosol | 31.87 | 32.86 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 31.87 | 32.86 |
| KRH25324 | Soybean | cytosol | 27.48 | 32.78 |
| CDX75084 | Canola | cytosol | 30.72 | 32.76 |
| CDY32070 | Canola | cytosol | 30.95 | 32.52 |
| Bra017278.1-P | Field mustard | cytosol | 30.95 | 32.52 |
| CDY40422 | Canola | cytosol | 30.95 | 32.52 |
| CDY59599 | Canola | cytosol | 30.72 | 32.52 |
| CDX84168 | Canola | cytosol | 30.48 | 32.51 |
| Solyc11g068920.1.1 | Tomato | cytosol | 30.25 | 32.43 |
| Bra005309.1-P | Field mustard | cytosol | 28.87 | 32.3 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 30.25 | 32.27 |
| PGSC0003DMT400050493 | Potato | cytosol | 30.02 | 32.18 |
| KRH68014 | Soybean | cytosol | 31.18 | 32.14 |
| Solyc01g009330.1.1 | Tomato | cytosol | 31.41 | 31.92 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 31.18 | 31.91 |
| AT2G35930.1 | Thale cress | cytosol | 30.25 | 31.87 |
| Solyc01g007020.2.1 | Tomato | cytosol | 30.02 | 31.86 |
| Bra023044.1-P | Field mustard | cytosol | 30.02 | 31.78 |
| CDX84587 | Canola | cytosol | 30.02 | 31.78 |
| KRG96257 | Soybean | cytosol | 30.48 | 31.5 |
| CDX79645 | Canola | cytosol | 29.56 | 31.37 |
| Bra033430.1-P | Field mustard | cytosol | 30.72 | 31.37 |
| KRH35744 | Soybean | cytosol | 30.25 | 31.26 |
| KRG96268 | Soybean | cytosol | 30.25 | 31.26 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 30.72 | 31.15 |
| PGSC0003DMT400054947 | Potato | cytosol | 21.48 | 30.79 |
| Bra012803.1-P | Field mustard | cytosol | 30.02 | 30.73 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 12.7 | 30.73 |
| Bra006925.1-P | Field mustard | cytosol | 30.72 | 30.57 |
| TraesCS2D01G449900.1 | Wheat | cytosol | 29.33 | 30.38 |
| AT3G52450.1 | Thale cress | cytosol | 30.48 | 30.34 |
| PGSC0003DMT400038197 | Potato | cytosol | 31.18 | 29.74 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 29.56 | 29.7 |
| TraesCS6D01G251200.1 | Wheat | cytosol | 28.41 | 28.47 |
| PGSC0003DMT400054948 | Potato | cytosol | 18.01 | 27.37 |
| TraesCS7D01G201600.1 | Wheat | mitochondrion | 26.33 | 25.79 |
| TraesCS4D01G229900.1 | Wheat | mitochondrion | 24.71 | 24.32 |
| TraesCS6D01G292200.1 | Wheat | mitochondrion | 25.17 | 24.01 |
| TraesCS7D01G393700.1 | Wheat | extracellular, vacuole | 21.02 | 23.82 |
| TraesCS2D01G305400.1 | Wheat | cytosol | 21.94 | 23.75 |
| TraesCS6D01G237900.1 | Wheat | extracellular | 22.17 | 23.59 |
| TraesCS2D01G296700.1 | Wheat | cytosol, mitochondrion, plastid | 22.86 | 22.45 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 31.18 | 21.84 |
| TraesCS4D01G237600.1 | Wheat | cytosol | 23.09 | 21.79 |
| TraesCS1D01G274600.1 | Wheat | mitochondrion | 22.17 | 21.19 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 |
| PANTHER:PTHR22849 | PANTHER:PTHR22849:SF30 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS6D01G167300 |
| EnsemblPlants:TraesCS6D01G167300.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | TIGR:cd16664 | SEG:seg | : |
Description
No Description!
Coordinates
chr6D:+:149882693..149883994
Molecular Weight (calculated)
45773.5 Da
IEP (calculated)
7.977
GRAVY (calculated)
0.205
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSLACVHME TSGGGTAQHH FVCPISLQPM QDPVTAPTGI SYDRRAIERW LANGHATCPV TGRPLSLTDL TPNHTLLRLI LSWHPASKVA PDVAPTLEPD
101: DPEVAVLVAK VMSPTSCPTA DVLCEAAASA AVNITARRCM VRAGVQWRVL RLFSSCGKTS SRAVMPTVEA CLALLDALDV SADELRPLVS GNHDLVDALT
201: HVLVTLENET YSGGVGNRNK TRDSAVRLLD SVTESADMVL LERLRPELFR AVTAVVRDRT VSPGATCAAL RALLNACPSG NGKNRVLIAE AGAAHEAIEL
301: ELSSWPSSPS GKSRRVTELV MALLARLCAC AEGRAAVVAH PAGIALVAKR ALRVSAVTDT SAVRVLAAVC GRAASPEVVR EMARVGAVGK LCCVLQADCD
401: RDVKEAARAV LRVHSGVWCG SPCVSAYLLS RYL
101: DPEVAVLVAK VMSPTSCPTA DVLCEAAASA AVNITARRCM VRAGVQWRVL RLFSSCGKTS SRAVMPTVEA CLALLDALDV SADELRPLVS GNHDLVDALT
201: HVLVTLENET YSGGVGNRNK TRDSAVRLLD SVTESADMVL LERLRPELFR AVTAVVRDRT VSPGATCAAL RALLNACPSG NGKNRVLIAE AGAAHEAIEL
301: ELSSWPSSPS GKSRRVTELV MALLARLCAC AEGRAAVVAH PAGIALVAKR ALRVSAVTDT SAVRVLAAVC GRAASPEVVR EMARVGAVGK LCCVLQADCD
401: RDVKEAARAV LRVHSGVWCG SPCVSAYLLS RYL
001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
Arabidopsis Description
PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.