Factsheet for VIT_08s0105g00190.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0018g01920.t01
VIT_16s0022g00510.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944
AT3G52450.1	VIT_09s0018g01920.t01	AT5G49830.2	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	99.51	99.51
Solyc01g007030.2.1	Tomato	cytosol	34.31	66.82
PGSC0003DMT400055045	Potato	cytosol	34.31	66.82
VIT_06s0009g00320.t01	Wine grape	cytosol	66.91	66.43
PGSC0003DMT400055050	Potato	cytosol	63.26	66.33
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	65.45	66.26
PGSC0003DMT400054949	Potato	cytosol	65.21	66.01
Solyc01g007020.2.1	Tomato	cytosol	65.45	65.93
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	65.45	65.77
PGSC0003DMT400055051	Potato	cytosol	62.53	65.23
Solyc01g007010.2.1	Tomato	cytosol	64.72	65.2
KRH68014	Soybean	cytosol	65.94	64.52
KRH35744	Soybean	cytosol	65.45	64.2
KRG96257	Soybean	cytosol	65.21	63.96
KRG96268	Soybean	cytosol	64.96	63.72
PGSC0003DMT400054947	Potato	cytosol	46.47	63.24
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	27.01	62.01
PGSC0003DMT400054948	Potato	cytosol	42.82	61.75
KRH72176	Soybean	cytosol	62.77	61.72
KRH32856	Soybean	cytosol	62.77	61.43
CDX78096	Canola	cytosol	57.66	60.93
CDX84168	Canola	cytosol	59.61	60.34
GSMUA_Achr7P03220_001	Banana	cytosol	45.5	60.32
CDX79645	Canola	cytosol	59.85	60.29
Bra023044.1-P	Field mustard	cytosol	59.85	60.15
CDY59599	Canola	cytosol	59.85	60.15
CDX75084	Canola	cytosol	59.37	60.1
CDX84587	Canola	cytosol	59.61	59.9
Bra017278.1-P	Field mustard	cytosol	59.61	59.47
CDY40422	Canola	cytosol	59.61	59.47
AT2G35930.1	Thale cress	cytosol	59.37	59.37
CDY32070	Canola	cytosol	59.37	59.22
Bra005309.1-P	Field mustard	cytosol	55.72	59.17
CDX95337	Canola	cytosol	58.88	59.17
CDY23218	Canola	cytosol	56.69	58.84
GSMUA_Achr11P...	Banana	cytosol	53.04	58.45
Bra012803.1-P	Field mustard	cytosol	59.61	57.92
GSMUA_Achr10P...	Banana	cytosol	50.85	57.26
Bra006925.1-P	Field mustard	cytosol	59.85	56.55
GSMUA_Achr8P30400_001	Banana	cytosol	50.37	56.4
Bra033430.1-P	Field mustard	cytosol	57.66	55.9
AT3G52450.1	Thale cress	cytosol	59.12	55.86
HORVU2Hr1G123130.1	Barley	cytosol	6.08	54.35
GSMUA_Achr5P01000_001	Banana	cytosol	46.23	53.52
Os04t0686000-01	Rice	cytosol	49.15	48.91
VIT_06s0009g00370.t01	Wine grape	cytosol	47.2	47.9
EES06927	Sorghum	cytosol	47.69	46.23
OQU85086	Sorghum	cytosol	47.93	46.14
TraesCS6B01G421400.1	Wheat	cytosol	46.96	45.95
TraesCS6B01G420600.1	Wheat	cytosol	46.72	45.71
TraesCS6B01G421900.1	Wheat	cytosol	46.72	45.71
Os02t0539200-01	Rice	cytosol	49.15	45.7
TraesCS6D01G367600.1	Wheat	cytosol	46.96	45.63
EES13136	Sorghum	cytosol	47.2	45.54
TraesCS6D01G367100.1	Wheat	cytosol	46.47	45.48
VIT_08s0105g00200.t01	Wine grape	cytosol	44.77	45.32
TraesCS6A01G382300.1	Wheat	cytosol	45.99	44.79
TraesCS6A01G382800.1	Wheat	cytosol	45.74	44.55
Os01t0865700-00	Rice	plastid	44.04	44.47
TraesCS2B01G314500.1	Wheat	cytosol	45.99	43.85
TraesCS3D01G370000.1	Wheat	cytosol	44.53	43.78
TraesCS3B01G409400.1	Wheat	cytosol	44.28	43.65
EES03937	Sorghum	plastid	43.31	43.63
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	41.61	43.62
TraesCS2A01G298000.1	Wheat	cytosol	45.74	43.62
TraesCS3A01G376900.1	Wheat	cytosol	44.28	43.54
TraesCS2D01G296100.1	Wheat	cytosol	45.5	43.39
HORVU0Hr1G003810.1	Barley	cytosol	45.5	43.39
Zm00001d042738_P001	Maize	cytosol	43.07	43.38
HORVU3Hr1G083500.1	Barley	cytosol	43.55	43.34
Zm00001d016730_P001	Maize	cytosol	45.74	43.12
HORVU6Hr1G089560.1	Barley	plastid	46.47	42.35
HORVU6Hr1G089590.1	Barley	plastid	46.47	42.26
Zm00001d003745_P001	Maize	nucleus	45.99	42.19
KXG26241	Sorghum	cytosol	45.99	40.91
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	39.42	37.94
TraesCS2B01G601300.1	Wheat	cytosol	39.17	37.7
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	38.69	37.24
VIT_01s0011g06140.t01	Wine grape	mitochondrion	37.47	34.84
HORVU2Hr1G123050.1	Barley	cytosol	27.98	34.23
TraesCS6B01G209000.1	Wheat	cytosol	33.09	32.15
VIT_03s0063g00180.t01	Wine grape	cytosol	32.36	32.05
TraesCS6D01G167300.1	Wheat	cytosol	33.33	31.64
TraesCS6A01G176800.1	Wheat	cytosol	33.09	31.48
GSMUA_Achr9P29630_001	Banana	cytosol	47.2	31.39
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	32.85	31.18
Os12t0161100-00	Rice	cytosol	31.14	29.16
KXG23010	Sorghum	cytosol	32.12	29.07
VIT_04s0044g00870.t01	Wine grape	cytosol	28.71	28.64
VIT_04s0044g01460.t01	Wine grape	cytosol	25.3	26.07
VIT_18s0166g00190.t01	Wine grape	plasma membrane	25.3	26.0
VIT_18s0001g08790.t01	Wine grape	cytosol	26.76	24.34
VIT_00s0471g00010.t01	Wine grape	cytosol	25.55	23.49
Zm00001d023480_P001	Maize	cytosol	30.66	22.54

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100250551	wikigene:100250551	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:CCB47911	ProteinID:CCB47911.1	UniProt:F6H6S5	EMBL:FN595245	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EntrezGene:LOC100250551	wikigene:LOC100250551	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849
PANTHER:PTHR22849:SF54	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0001983CBF	InterPro:Ubox_domain
ArrayExpress:VIT_08s0105g00190	EnsemblPlantsGene:VIT_08s0105g00190	EnsemblPlants:VIT_08s0105g00190.t01	unigene:Vvi.25351	RefSeq:XP_002265439	RefSeq:XP_002265439.2
RefSeq:XP_002267438	RefSeq:XP_002267438.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6H6S5]

Coordinates

chr8:-:7123045..7124512

Molecular Weight (calculated)

45131.3 Da

IEP (calculated)

8.593

GRAVY (calculated)

0.071

Length

411 amino acids

Sequence
(BLAST)

001: MEEIDVPPFF LCPISLEIMK DPVTVSTGIT YDRESIEKWL FSGKNNTCPA TKQVLSADSD LTPNHTLRRL IQAWCTLNAS NGVERIPTPK IPINKIQIVK
101: LLNDAKSPQL QMKCIGKLRA LATESDANKR CIESAGAVEF LASIVSKANF TTFEEESDKG LESRSASSEA LSILHYLLLS EAGLKKLVGK NGEFVGCLVR
201: VLQRGNYESR AYAVMLLSSM LQVADPIQLI ALKPEFFVEA VQVLQDHISH QATKATLKLL IEVCPWGRNK VKAVEAGAVS ILTELLLASS EKRACEMILT
301: VLDQLCGCAE GRAELLKHAA GMAIVSKKIL RVSHVASERA VRILYSISKF SATPSVLQEM SQLGVVAKLC LVLQVDCGSR TKEKTRDILR LHARAWKNSP
401: CIPTNLLSSY P

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.