CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
EES01688	golgi
EES19684	golgi
KXG19616
OQU75612
OQU75930
OQU76071
OQU85385
OQU87774	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	EER89430	AT4G25200.1	21798944
AT2G35930.1	EER89431	AT4G25200.1	21798944
AT2G35930.1	KXG19616	AT4G25200.1	21798944
AT2G35930.1	OQU75612	AT4G25200.1	21798944
AT2G35930.1	OQU75930	AT4G25200.1	21798944
AT2G35930.1	OQU76071	AT4G25200.1	21798944
AT2G35930.1	OQU85385	AT4G25200.1	21798944
AT3G52450.1	EES01688	AT1G07000.1	23170036
AT3G52450.1	EES19684	AT1G07000.1	23170036
AT3G52450.1	OQU87774	AT1G07000.1	23170036
AT3G52450.1	EES01688	AT1G07000.1	23170036
AT3G52450.1	EES19684	AT1G07000.1	23170036
AT3G52450.1	OQU87774	AT1G07000.1	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	82.63	89.8
Os04t0686000-01	Rice	cytosol	75.12	77.48
HORVU2Hr1G123130.1	Barley	cytosol	8.22	76.09
TraesCS2B01G601300.1	Wheat	cytosol	63.38	63.23
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	62.91	62.76
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	61.97	61.83
HORVU2Hr1G123050.1	Barley	cytosol	46.48	58.93
GSMUA_Achr5P01000_001	Banana	cytosol	43.9	52.68
GSMUA_Achr7P03220_001	Banana	cytosol	37.56	51.61
EES03937	Sorghum	plastid	48.12	50.25
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	46.01	47.69
EES06927	Sorghum	cytosol	47.42	47.64
OQU85086	Sorghum	cytosol	47.65	47.54
PGSC0003DMT400055045	Potato	cytosol	23.47	47.39
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	45.54	47.2
Solyc01g007030.2.1	Tomato	cytosol	23.24	46.92
VIT_06s0009g00320.t01	Wine grape	cytosol	44.37	45.65
KRH22633	Soybean	cytosol, nucleus	42.96	45.41
KXG26241	Sorghum	cytosol	49.06	45.24
KRH72176	Soybean	cytosol	43.66	44.5
KRH32856	Soybean	cytosol	43.66	44.29
KRH26691	Soybean	cytosol	40.14	44.19
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	42.25	44.01
CDY32070	Canola	cytosol	42.49	43.93
PGSC0003DMT400054949	Potato	cytosol	41.78	43.84
CDX84168	Canola	cytosol	41.78	43.84
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	41.78	43.84
AT2G35930.1	Thale cress	cytosol	42.25	43.8
CDX75084	Canola	cytosol	41.55	43.6
Bra017278.1-P	Field mustard	cytosol	42.02	43.45
CDY40422	Canola	cytosol	42.02	43.45
CDX78096	Canola	cytosol	39.67	43.44
KRH35744	Soybean	cytosol	42.72	43.44
KRH68014	Soybean	cytosol	42.72	43.33
KRG96257	Soybean	cytosol	42.49	43.2
CDX79645	Canola	cytosol	41.31	43.14
CDX84587	Canola	cytosol	41.31	43.03
KRG96268	Soybean	cytosol	42.25	42.96
Solyc01g007020.2.1	Tomato	cytosol	41.08	42.89
Bra023044.1-P	Field mustard	cytosol	41.08	42.79
Bra005309.1-P	Field mustard	cytosol	38.73	42.64
PGSC0003DMT400055050	Potato	cytosol	39.2	42.6
CDX95337	Canola	cytosol	40.85	42.54
CDY23218	Canola	cytosol	39.44	42.42
PGSC0003DMT400055051	Potato	cytosol	39.2	42.39
CDY59599	Canola	cytosol	40.61	42.3
Solyc11g068920.1.1	Tomato	cytosol	39.91	42.08
PGSC0003DMT400050493	Potato	cytosol	39.91	42.08
Solyc01g007010.2.1	Tomato	cytosol	40.14	41.91
KRH25324	Soybean	cytosol	35.68	41.87
Solyc01g009330.1.1	Tomato	cytosol	41.78	41.78
Bra012803.1-P	Field mustard	cytosol	41.08	41.37
PGSC0003DMT400054948	Potato	cytosol	27.0	40.35
Bra033430.1-P	Field mustard	cytosol	40.14	40.33
AT3G52450.1	Thale cress	cytosol	40.85	40.0
Bra006925.1-P	Field mustard	cytosol	40.61	39.77
PGSC0003DMT400054947	Potato	cytosol	27.93	39.4
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	16.43	39.11
PGSC0003DMT400038197	Potato	cytosol	40.85	38.33
EES11341	Sorghum	cytosol	31.22	32.28
KXG23010	Sorghum	cytosol	33.57	31.5
EES06938	Sorghum	extracellular	30.05	31.45
KXG19704	Sorghum	mitochondrion	33.33	30.94
OQU81614	Sorghum	cytosol	28.87	30.9
EES05563	Sorghum	mitochondrion	32.16	29.65
EES07426	Sorghum	cytosol	29.34	29.14
GSMUA_Achr9P29630_001	Banana	cytosol	41.78	28.8
OQU80253	Sorghum	mitochondrion	14.55	28.44
OQU81292	Sorghum	mitochondrion	14.32	28.37
EER92576	Sorghum	mitochondrion	29.11	27.31
EER95229	Sorghum	cytosol	28.64	26.58
EES05205	Sorghum	cytosol	26.76	25.17
KXG38738	Sorghum	plastid	27.93	24.09
OQU81548	Sorghum	mitochondrion	24.88	23.71
KXG22102	Sorghum	mitochondrion	23.94	22.32

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8076501	InterPro:ARM-like	InterPro:ARM-type_fold
UniProt:C5YB01	EnsemblPlants:EES13136	ProteinID:EES13136	ProteinID:EES13136.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF11	SMART:SM00504	EnsemblPlantsGene:SORBI_3006G274933
SUPFAM:SSF48371	SUPFAM:SSF57850	unigene:Sbi.18350	UniParc:UPI0001A87637	InterPro:Ubox_domain	RefSeq:XP_002448808.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:60616840..60619003

Molecular Weight (calculated)

45488.7 Da

IEP (calculated)

8.038

GRAVY (calculated)

0.045

Length

426 amino acids

Sequence
(BLAST)

001: MEEEPQPQVE VEVPCYFLCP ISLSIMRDPV TLPTGITYDR DGIERWLLTA ATCPLTKQPV PADCDPTPNH TLRRLIQSWC ALHAADGVDR VHTPKPRADV
101: AALVSRLHDA AAAGSTAPQP QLLAALRELR DVAAESDRNR KLVAAVPGAV DVLAAVFAAS ANAKSSEGTA AAAAAVRDEA LEVVSSLQVP EQCLRRVAET
201: NEALVSALVS ALQRSSAASR ARAALLLERV TAALPPSRLA SLPEQVFREA VELLRDRPAV SRPATKAALH VLVRTAAWGR NRVKAVDAGA VPVLVDMLFD
301: DGAERRACEL VLAALDRLCG CAEGRADLVA HGAGVAAVGR KALRVSEVAT DKAVRVLRSV ARHAATAAVV QEMAHAGVVA TLCVVAQSEQ YAERTRERAR
401: ETLRLHARAW RTSPCLHHHL QALYPC

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.