Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06927 | Sorghum | cytosol | 96.25 | 96.93 |
| Zm00001d016730_P001 | Maize | cytosol | 89.93 | 88.07 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 73.77 | 75.0 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 73.77 | 75.0 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 73.54 | 74.76 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 73.3 | 74.52 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 73.54 | 74.23 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 73.3 | 74.17 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 72.83 | 73.7 |
| Os02t0539200-01 | Rice | cytosol | 75.88 | 73.3 |
| HORVU6Hr1G089560.1 | Barley | plastid | 74.0 | 70.07 |
| HORVU6Hr1G089590.1 | Barley | plastid | 74.0 | 69.91 |
| KXG26241 | Sorghum | cytosol | 63.23 | 58.44 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 39.81 | 54.84 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 43.79 | 52.68 |
| Solyc01g007030.2.1 | Tomato | cytosol | 25.29 | 51.18 |
| PGSC0003DMT400055045 | Potato | cytosol | 24.82 | 50.24 |
| EES03937 | Sorghum | plastid | 47.78 | 50.0 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 46.37 | 48.18 |
| CDY40422 | Canola | cytosol | 46.37 | 48.06 |
| Bra017278.1-P | Field mustard | cytosol | 46.37 | 48.06 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 46.14 | 47.93 |
| CDY32070 | Canola | cytosol | 46.14 | 47.82 |
| CDX75084 | Canola | cytosol | 45.43 | 47.78 |
| EES13136 | Sorghum | cytosol | 47.54 | 47.65 |
| KRH68014 | Soybean | cytosol | 46.6 | 47.38 |
| CDX84168 | Canola | cytosol | 44.96 | 47.29 |
| Bra005309.1-P | Field mustard | cytosol | 42.86 | 47.29 |
| AT2G35930.1 | Thale cress | cytosol | 45.43 | 47.2 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 44.96 | 46.94 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 45.43 | 46.86 |
| CDX79645 | Canola | cytosol | 44.73 | 46.81 |
| Bra023044.1-P | Field mustard | cytosol | 44.73 | 46.7 |
| CDX84587 | Canola | cytosol | 44.73 | 46.7 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 44.26 | 46.55 |
| KRH22633 | Soybean | cytosol, nucleus | 43.79 | 46.4 |
| Solyc01g007020.2.1 | Tomato | cytosol | 44.26 | 46.32 |
| PGSC0003DMT400054949 | Potato | cytosol | 44.03 | 46.31 |
| KRG96257 | Soybean | cytosol | 45.43 | 46.3 |
| CDX78096 | Canola | cytosol | 42.15 | 46.27 |
| KRH35744 | Soybean | cytosol | 45.2 | 46.06 |
| KRG96268 | Soybean | cytosol | 45.2 | 46.06 |
| Solyc11g068920.1.1 | Tomato | cytosol | 43.56 | 46.04 |
| KRH26691 | Soybean | cytosol | 41.69 | 45.99 |
| KRH32856 | Soybean | cytosol | 45.2 | 45.95 |
| KRH72176 | Soybean | cytosol | 44.96 | 45.93 |
| Solyc01g007010.2.1 | Tomato | cytosol | 43.79 | 45.83 |
| PGSC0003DMT400050493 | Potato | cytosol | 43.33 | 45.79 |
| CDY59599 | Canola | cytosol | 43.79 | 45.72 |
| CDY23218 | Canola | cytosol | 42.39 | 45.71 |
| CDX95337 | Canola | cytosol | 43.56 | 45.48 |
| PGSC0003DMT400055051 | Potato | cytosol | 41.92 | 45.43 |
| PGSC0003DMT400055050 | Potato | cytosol | 41.69 | 45.41 |
| KRH25324 | Soybean | cytosol | 38.17 | 44.9 |
| PGSC0003DMT400054947 | Potato | cytosol | 31.38 | 44.37 |
| AT3G52450.1 | Thale cress | cytosol | 44.5 | 43.68 |
| Solyc01g009330.1.1 | Tomato | cytosol | 43.33 | 43.43 |
| Bra006925.1-P | Field mustard | cytosol | 44.03 | 43.22 |
| Bra033430.1-P | Field mustard | cytosol | 42.86 | 43.16 |
| Bra012803.1-P | Field mustard | cytosol | 42.39 | 42.79 |
| PGSC0003DMT400054948 | Potato | cytosol | 28.1 | 42.11 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 17.1 | 40.78 |
| PGSC0003DMT400038197 | Potato | cytosol | 43.09 | 40.53 |
| EES06938 | Sorghum | extracellular | 29.74 | 31.2 |
| KXG23010 | Sorghum | cytosol | 32.79 | 30.84 |
| EES11341 | Sorghum | cytosol | 29.74 | 30.83 |
| KXG19704 | Sorghum | mitochondrion | 32.08 | 29.85 |
| EES05563 | Sorghum | mitochondrion | 32.08 | 29.65 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 42.86 | 29.61 |
| OQU81614 | Sorghum | cytosol | 27.17 | 29.15 |
| EER92576 | Sorghum | mitochondrion | 30.21 | 28.41 |
| EES07426 | Sorghum | cytosol | 27.87 | 27.74 |
| OQU80253 | Sorghum | mitochondrion | 14.05 | 27.52 |
| EES05205 | Sorghum | cytosol | 27.87 | 26.27 |
| OQU81292 | Sorghum | mitochondrion | 13.11 | 26.05 |
| OQU81548 | Sorghum | mitochondrion | 26.7 | 25.5 |
| EER95229 | Sorghum | cytosol | 26.93 | 25.05 |
| KXG38738 | Sorghum | plastid | 27.17 | 23.48 |
| KXG22102 | Sorghum | mitochondrion | 24.12 | 22.54 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A1Z5RNY7 | InterPro:ARM-like | InterPro:ARM-type_fold |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 |
| InterPro:IPR011989 | InterPro:IPR013083 | EnsemblPlants:OQU85086 | ProteinID:OQU85086 | ProteinID:OQU85086.1 | PFAM:PF04564 |
| PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF62 | SMART:SM00504 | EnsemblPlantsGene:SORBI_3004G169200 | SUPFAM:SSF48371 |
| SUPFAM:SSF57850 | UniParc:UPI000B424011 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr4:-:52003635..52005512
Molecular Weight (calculated)
46073.7 Da
IEP (calculated)
8.553
GRAVY (calculated)
0.037
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVSSSSAAA EVPHYFLCPI SLEVMRDPVT LATGITYDRA SIERWLFADG HATCPVTRRA LAPAEMDATP NHTLRRLIQA WCAAHQVERF PTPRPPLDSC
101: RVAALLDEGR HGGDRQAAAA LREIKAVVAE SERNRRCVEA TPGAVDFLAS LVAKHSSKRA SSQQDAADDF VLDSPTSTSS PAEDALGVLY SLKPSERSLA
201: QILERDGDFL DTLACVLRRP SYRSRAYGIL LLKAMTAVMT PARLTTVSAD LVQEVVRVVS DRVSSKAVRA ALHVLCRLCP WGRNRVKAVE AGAMAALVEL
301: LLDAGGRRVT ELAVVAIDHL CGCAEGRSEL VAHPAGLAVV SKKVMRVSTA ATESAVRALH AVARHSPTPS VLQEMLAVGV VAKLLLVLQV NAGERAGLRA
401: KEILKTHARV WKDSPCLQTY MRDSYPC
101: RVAALLDEGR HGGDRQAAAA LREIKAVVAE SERNRRCVEA TPGAVDFLAS LVAKHSSKRA SSQQDAADDF VLDSPTSTSS PAEDALGVLY SLKPSERSLA
201: QILERDGDFL DTLACVLRRP SYRSRAYGIL LLKAMTAVMT PARLTTVSAD LVQEVVRVVS DRVSSKAVRA ALHVLCRLCP WGRNRVKAVE AGAMAALVEL
301: LLDAGGRRVT ELAVVAIDHL CGCAEGRSEL VAHPAGLAVV SKKVMRVSTA ATESAVRALH AVARHSPTPS VLQEMLAVGV VAKLLLVLQV NAGERAGLRA
401: KEILKTHARV WKDSPCLQTY MRDSYPC
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.