CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028294_P001	Maize	cytosol	96.73	96.73
Zm00001d048008_P001	Maize	cytosol	95.86	95.03
HORVU4Hr1G066070.1	Barley	cytosol	89.98	89.78
Os03t0232600-01	Rice	cytosol	89.76	89.76
TraesCS4B01G236200.1	Wheat	cytosol	89.11	89.11
TraesCS4D01G237600.1	Wheat	cytosol	89.11	89.11
TraesCS4A01G060800.1	Wheat	cytosol	88.89	88.89
Zm00001d019807_P001	Maize	extracellular	18.08	88.3
GSMUA_Achr8P04940_001	Banana	cytosol	64.71	68.75
GSMUA_Achr2P08620_001	Banana	cytosol	64.05	67.74
GSMUA_Achr3P25750_001	Banana	cytosol	61.22	65.5
Zm00001d000044_P001	Maize	cytosol	32.24	64.07
CDX83098	Canola	cytosol	59.91	62.08
VIT_18s0001g08790.t01	Wine grape	cytosol	61.0	61.95
Bra029975.1-P	Field mustard	cytosol	59.7	61.85
AT3G49810.1	Thale cress	cytosol	60.35	61.83
VIT_00s0471g00010.t01	Wine grape	cytosol	60.13	61.74
GSMUA_Achr4P07400_001	Banana	cytosol	58.17	61.52
CDY53333	Canola	cytosol	59.48	61.07
KRH58142	Soybean	cytosol	58.17	60.14
KRH77156	Soybean	cytosol	58.61	59.91
CDY18670	Canola	cytosol	57.73	59.82
Bra037833.1-P	Field mustard	cytosol	57.73	59.82
CDY69247	Canola	cytosol	57.52	59.59
Solyc04g077610.2.1	Tomato	cytosol	54.03	59.19
PGSC0003DMT400012566	Potato	cytosol	57.73	59.02
AT5G65920.1	Thale cress	cytosol	55.99	57.88
KRH61438	Soybean	cytosol	53.16	57.82
KRH52124	Soybean	cytosol	53.38	57.65
KRG88755	Soybean	cytosol	52.72	56.28
KRH05554	Soybean	cytosol	50.98	55.85
KRH55660	Soybean	cytosol	14.81	54.4
KRH28330	Soybean	plastid	58.61	52.33
EES03937	Sorghum	plastid	26.14	29.41
EES06938	Sorghum	extracellular	25.71	28.99
EES05205	Sorghum	cytosol	28.54	28.92
OQU81614	Sorghum	cytosol	24.84	28.64
EES13136	Sorghum	cytosol	26.58	28.64
OQU81548	Sorghum	mitochondrion	26.8	27.52
KXG19704	Sorghum	mitochondrion	27.23	27.23
OQU85086	Sorghum	cytosol	25.05	26.93
EES06927	Sorghum	cytosol	24.84	26.89
EES11341	Sorghum	cytosol	23.09	25.73
EER92576	Sorghum	mitochondrion	24.84	25.11
EES05563	Sorghum	mitochondrion	25.05	24.89
OQU80253	Sorghum	mitochondrion	11.33	23.85
EES07426	Sorghum	cytosol	22.22	23.78
KXG23010	Sorghum	cytosol	22.88	23.13
KXG38738	Sorghum	plastid	24.84	23.08
KXG26241	Sorghum	cytosol	23.09	22.94
OQU81292	Sorghum	mitochondrion	10.46	22.33
KXG22102	Sorghum	mitochondrion	20.48	20.57

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	UniProt:C5WRS8
EnsemblPlants:EER95229	ProteinID:EER95229	ProteinID:EER95229.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009987	GO:GO:0016020
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	GO:GO:1900457	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF6
SMART:SM00504	EnsemblPlantsGene:SORBI_3001G448700	SUPFAM:SSF48371	SUPFAM:SSF57850	unigene:Sbi.4512	UniParc:UPI0001A83316
InterPro:Ubox_domain	RefSeq:XP_002468231.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:72598605..72601731

Molecular Weight (calculated)

49391.7 Da

IEP (calculated)

7.566

GRAVY (calculated)

0.150

Length

459 amino acids

Sequence
(BLAST)

001: MPQYQELPCG GQVLDIDTAL KDGILGGALE PVDAAAGDAG KQPLELRKMM DELDAAGDGG GDEAVPAVFI CPISLEPMVD PVTLCTGQTY ERANISRWLA
101: LGHRTCPTTM QELWDDALTP NATLRQLIAA WFSRRYTRFK KRSADFHGRA ADLVHSLRGT AVPRRQPLKG QARVAALREL RTLATTHQSV TKAIAEAGGV
201: ALLTSLLGPF TSHAVGTEAV AILVSGVPLD VDAKAALMQP AKVSLVVDML NEGAAETKIN CVRLIRILMD ERGFRPETVA SLSLLVGVMR LIRDKRHPDG
301: VVAGLELLNS ICAVHRPARS MIVSIGAVPQ LVELLPELAT ECVEPALDIL DALSAVPEGR VALKDCPRTI PNAVRLLMRV SEACTRRALS MLWTVCRMAP
401: EECAPAAVEA GLAAKLLLVI QSGCAPELKQ KASELLKLCR LNYTDTLFIS KCKLTRTIQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.