Factsheet for Zm00001d028294_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95229	Sorghum	cytosol	96.73	96.73
Zm00001d048008_P001	Maize	cytosol	95.42	94.6
HORVU4Hr1G066070.1	Barley	cytosol	90.2	90.0
Os03t0232600-01	Rice	cytosol	89.76	89.76
Zm00001d019807_P001	Maize	extracellular	18.3	89.36
TraesCS4B01G236200.1	Wheat	cytosol	89.32	89.32
TraesCS4A01G060800.1	Wheat	cytosol	89.32	89.32
TraesCS4D01G237600.1	Wheat	cytosol	89.32	89.32
GSMUA_Achr8P04940_001	Banana	cytosol	64.05	68.06
GSMUA_Achr2P08620_001	Banana	cytosol	63.18	66.82
GSMUA_Achr3P25750_001	Banana	cytosol	61.0	65.27
Zm00001d000044_P001	Maize	cytosol	32.03	63.64
CDX83098	Canola	cytosol	59.91	62.08
Bra029975.1-P	Field mustard	cytosol	59.48	61.63
AT3G49810.1	Thale cress	cytosol	59.91	61.38
VIT_18s0001g08790.t01	Wine grape	cytosol	60.35	61.28
GSMUA_Achr4P07400_001	Banana	cytosol	57.73	61.06
VIT_00s0471g00010.t01	Wine grape	cytosol	59.26	60.85
CDY53333	Canola	cytosol	59.26	60.85
CDY18670	Canola	cytosol	57.52	59.59
Bra037833.1-P	Field mustard	cytosol	57.52	59.59
KRH58142	Soybean	cytosol	57.52	59.46
CDY69247	Canola	cytosol	57.3	59.37
KRH77156	Soybean	cytosol	57.95	59.24
PGSC0003DMT400012566	Potato	cytosol	57.3	58.57
Solyc04g077610.2.1	Tomato	cytosol	53.38	58.47
AT5G65920.1	Thale cress	cytosol	55.34	57.21
KRH61438	Soybean	cytosol	52.29	56.87
KRH52124	Soybean	cytosol	52.51	56.71
KRG88755	Soybean	cytosol	52.07	55.58
KRH05554	Soybean	cytosol	50.33	55.13
KRH55660	Soybean	cytosol	14.6	53.6
KRH28330	Soybean	plastid	57.95	51.75
Zm00001d016719_P001	Maize	cytosol	29.63	31.7
Zm00001d042738_P001	Maize	cytosol	26.8	30.15
Zm00001d050689_P001	Maize	cytosol	27.89	29.84
Zm00001d003624_P001	Maize	cytosol	25.27	29.0
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	24.62	28.83
Zm00001d016764_P001	Maize	extracellular	25.05	27.51
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	26.58	27.48
Zm00001d050712_P001	Maize	extracellular, plastid	24.4	27.38
Zm00001d016730_P001	Maize	cytosol	25.49	26.83
Zm00001d044734_P001	Maize	mitochondrion	25.71	26.7
Zm00001d002498_P001	Maize	cytosol	23.75	26.27
Zm00001d026040_P001	Maize	cytosol	23.31	26.16
Zm00001d030251_P001	Maize	cytosol	25.05	25.9
Zm00001d017976_P001	Maize	mitochondrion	25.05	25.44
Zm00001d028374_P001	Maize	mitochondrion	23.97	24.61
Zm00001d003745_P001	Maize	nucleus	23.97	24.55
Zm00001d017671_P001	Maize	cytosol	22.66	24.47
Zm00001d038280_P001	Maize	cytosol	20.91	21.24
Zm00001d023480_P001	Maize	cytosol	22.44	18.43

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100281502	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
UniProt:B6SV72	EMBL:EU956637	EMBL:EU956924	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0016874	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
ProteinID:ONL95373.1	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF6	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000182B489	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d028294	EnsemblPlants:Zm00001d028294_P001
EnsemblPlants:Zm00001d028294_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Ubiquitin-protein ligase

Coordinates

chr1:+:29450944..29452323

Molecular Weight (calculated)

49253.5 Da

IEP (calculated)

7.309

GRAVY (calculated)

0.141

Length

459 amino acids

Sequence
(BLAST)

001: MPQYQELPCG GQVLDIDTAL KDGILGGALE PEDAAAGDAG KQPVELRKMM DELDAAGDGG GDEAVPAVFI CPISLEPMVD PVTLCTGQTY ERANISRWLA
101: LGHRTCPTTM QELWDDALTP NATLRQLIAA WFSRRYTRFK KRSADFHGRA ADLVHGLRGT AMPRRQALKG QARVAALREL RALATAHQSV TKAIAEAGGV
201: VLLTSLLGPF TSHAVGTEAV AILVSGVPLD ADTKAALMQP AKVSLVVDML NEGAADTKIN CVRLIRILMD ERGFRPETVA SLSLLVGVMR LIRDKRHPDG
301: VVAGLELLNS ICAVHRPARS MVVSIGAVPQ LVELLPELAT ECVEPALDIL DALSAVPEGR TALKDCPRTI PNAVRVLMRV SEACTRRALS MLWTVCRMAP
401: EECAPAAVEA GLAAKLLLVI QSGCAPELKQ KASELLKLCR LNCTDTLFIS KCKLTRTIQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.