Factsheet for Zm00001d017671_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07426	Sorghum	cytosol	94.12	93.24
TraesCS6B01G290700.1	Wheat	cytosol	84.94	83.76
HORVU6Hr1G066870.1	Barley	cytosol	84.24	83.45
TraesCS6D01G251200.1	Wheat	cytosol	84.71	83.33
TraesCS6A01G263700.1	Wheat	cytosol	83.76	82.79
Os02t0690600-01	Rice	cytosol	80.24	80.24
OQU80253	Sorghum	mitochondrion	37.65	73.39
OQU81292	Sorghum	mitochondrion	36.47	72.09
Zm00001d002498_P001	Maize	cytosol	64.0	65.54
Zm00001d026040_P001	Maize	cytosol	63.06	65.53
GSMUA_Achr3P18060_001	Banana	cytosol	43.53	48.56
Zm00001d019807_P001	Maize	extracellular	8.94	40.43
GSMUA_Achr5P13860_001	Banana	cytosol	28.71	40.26
PGSC0003DMT400004594	Potato	cytosol	37.41	39.07
Solyc01g080920.2.1	Tomato	cytosol	37.18	38.63
Zm00001d042738_P001	Maize	cytosol	30.59	31.86
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	26.82	29.08
Zm00001d050712_P001	Maize	extracellular, plastid	25.41	26.41
Zm00001d003745_P001	Maize	nucleus	27.53	26.12
Zm00001d016764_P001	Maize	extracellular	25.65	26.08
Zm00001d016730_P001	Maize	cytosol	26.59	25.92
Zm00001d017976_P001	Maize	mitochondrion	27.06	25.44
Zm00001d016719_P001	Maize	cytosol	24.94	24.71
Zm00001d050689_P001	Maize	cytosol	24.71	24.48
Zm00001d044734_P001	Maize	mitochondrion	25.18	24.21
Zm00001d030251_P001	Maize	cytosol	25.18	24.1
Zm00001d003624_P001	Maize	cytosol	22.59	24.0
Zm00001d028374_P001	Maize	mitochondrion	25.18	23.94
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	24.0	22.97
Zm00001d028294_P001	Maize	cytosol	24.47	22.66
Zm00001d048008_P001	Maize	cytosol	23.76	21.81
Zm00001d023480_P001	Maize	cytosol	27.53	20.93
Zm00001d038280_P001	Maize	cytosol	21.65	20.35
Zm00001d000044_P001	Maize	cytosol	9.65	17.75

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100383936	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:AQK73712.1	InterPro:ARM-like
InterPro:ARM-type_fold	EMBL:BT068670	UniProt:C0PK51	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0016874	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF29	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000195CD0A	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d017671	EnsemblPlants:Zm00001d017671_P001	EnsemblPlants:Zm00001d017671_T001
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase PUB23

Coordinates

chr5:+:203614656..203615933

Molecular Weight (calculated)

45651.5 Da

IEP (calculated)

5.472

GRAVY (calculated)

0.199

Length

425 amino acids

Sequence
(BLAST)

001: MEEEPPHLFL CPISMELMDD PVTVSTGVTY DRRSIERWIF GCGRTTCPAT MQSLANLDLT PNHTLKRVIG SWLDRGSPST SASASPSASS LSSPAHELAT
101: PLSRILEAER LRSALAGLDE TPFKVTALKN MRACMAGDVA MQCEFVSSGG IQAAGRVMAQ ALAESGAGGD FSAFTACEEA AAVLALLPLA DAASVGLLLA
201: PEHMRPLMAL LQRGSAEARL HAMDIVTKIS NAGAGDWTAR VEVDDVLKSL LELLADEVSA RLSSRALDVL LDVVELSRVG PTKAVEVGAV HVLVELLANA
301: DDRHDAERIL LLLKRLCKCP EGRTAFAEHD LSVAAVAKTM LRVSELATQL AVKVLWLVSV VAPSEKVLED MVLTGAVAKL LGLLHVESPP ATKQKTVRMV
401: RINGVFWRQY PCFPTDLRDY LRLLD

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.