Factsheet for Os02t0690600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G290700.1	Wheat	cytosol	85.41	84.22
HORVU6Hr1G066870.1	Barley	cytosol	84.94	84.15
TraesCS6D01G251200.1	Wheat	cytosol	84.94	83.56
TraesCS6A01G263700.1	Wheat	cytosol	84.24	83.26
EES07426	Sorghum	cytosol	81.65	80.89
Zm00001d017671_P001	Maize	cytosol	80.24	80.24
Os04t0589700-01	Rice	cytosol	68.0	68.65
OQU80253	Sorghum	mitochondrion	33.88	66.06
OQU81292	Sorghum	mitochondrion	32.47	64.19
GSMUA_Achr3P18060_001	Banana	cytosol	45.41	50.66
GSMUA_Achr5P13860_001	Banana	cytosol	30.35	42.57
PGSC0003DMT400004594	Potato	cytosol	38.35	40.05
Solyc01g080920.2.1	Tomato	cytosol	38.12	39.61
Os01t0865700-00	Rice	plastid	30.82	32.19
Os04t0686000-01	Rice	cytosol	31.06	31.96
Os12t0161100-00	Rice	cytosol	31.06	30.07
Os02t0539200-01	Rice	cytosol	28.47	27.38
Os02t0548700-00	Rice	cytosol, extracellular, plastid	26.12	26.62
Os06t0248500-00	Rice	mitochondrion	25.65	24.06
Os03t0240600-01	Rice	plastid	24.94	23.82
Os04t0418500-01	Rice	plastid	25.18	23.73
Os02t0738200-01	Rice	mitochondrion	25.41	23.68
Os04t0437300-01	Rice	cytosol	23.06	23.0
Os05t0439400-01	Rice	plasma membrane	22.82	21.46
Os03t0232600-01	Rice	cytosol	22.59	20.91
Os02t0540700-00	Rice	plastid	24.47	20.59

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4330378	EMBL:AK110831	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:BAD07682.1	ProteinID:BAF09706.1	ProteinID:BAS80378.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
EnsemblPlantsGene:Os02g0690600	EnsemblPlants:Os02t0690600-01	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF29
UniProt:Q6ZGX9	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0000236792	InterPro:Ubox_domain
RefSeq:XP_015624765.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

plant U-box-containing protein 36, U-box protein 36Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0690600-01)

Coordinates

chr2:+:28352052..28353541

Molecular Weight (calculated)

46060.9 Da

IEP (calculated)

5.520

GRAVY (calculated)

0.157

Length

425 amino acids

Sequence
(BLAST)

001: MAAMDEPPQL FLCPISMELM EDPVTVSTGV TYDRRSIEEW LFVYGRTTCP ATMQPLSNFD LTPNHTLKRV ISSWLDRGSS SSSSSSPSTS TLSSPIHELA
101: TPLSRALEQE RLLAALAELE ETPFKVTKLK SMRARMAGDV AMQGEFVASG GVRVVGRVMA QALAESGGDF SAFAACEEAA AVLAALPLSD EASVRVVLAP
201: ECIRPVMALL QRGGAEARLH AMDILTKISS SGSGGDWTAG VDIDDVIKSL LELLSDEAST RLSSRALDVL LDVVERARGA RAKAVEVGAV HVLVELLADA
301: DDRRVTERVL LLLKRLCKCP EGRLAFAEHD LSVAAVARTM LRVSELSTQL AVKVLWLVSV VAPSEKVLED MMLTGAVAKL LGLLHVESSP STKQKTVRMV
401: RIHGVVWRQY ACFPTDFRDY LRLLD

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.