CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80253	Sorghum	mitochondrion	96.28	94.95
EES07426	Sorghum	cytosol	74.88	37.53
Zm00001d017671_P001	Maize	cytosol	72.09	36.47
TraesCS6B01G290700.1	Wheat	cytosol	66.51	33.18
TraesCS6D01G251200.1	Wheat	cytosol	66.51	33.1
HORVU6Hr1G066870.1	Barley	cytosol	66.05	33.1
TraesCS6A01G263700.1	Wheat	cytosol	66.05	33.02
Os02t0690600-01	Rice	cytosol	64.19	32.47
EES11341	Sorghum	cytosol	54.42	28.4
GSMUA_Achr3P18060_001	Banana	cytosol	40.47	22.83
PGSC0003DMT400004594	Potato	cytosol	32.56	17.2
Solyc01g080920.2.1	Tomato	cytosol	32.09	16.87
EES13136	Sorghum	cytosol	28.37	14.32
EES03937	Sorghum	plastid	26.51	13.97
EES06927	Sorghum	cytosol	26.98	13.68
OQU85086	Sorghum	cytosol	26.05	13.11
KXG23010	Sorghum	cytosol	26.98	12.78
GSMUA_Achr5P13860_001	Banana	cytosol	17.67	12.54
KXG26241	Sorghum	cytosol	25.12	11.69
EES05563	Sorghum	mitochondrion	23.72	11.04
EER95229	Sorghum	cytosol	22.33	10.46
KXG19704	Sorghum	mitochondrion	22.33	10.46
OQU81548	Sorghum	mitochondrion	21.4	10.29
EER92576	Sorghum	mitochondrion	21.4	10.13
EES06938	Sorghum	extracellular	18.14	9.58
EES05205	Sorghum	cytosol	20.0	9.49
KXG22102	Sorghum	mitochondrion	18.6	8.75
KXG38738	Sorghum	plastid	20.0	8.7
OQU81614	Sorghum	cytosol	15.35	8.29

Protein Annotations

EnsemblPlants:OQU81292	EnsemblPlantsGene:SORBI_3006G037650	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-type_fold	PANTHER:PTHR22849
PANTHER:PTHR22849:SF29	ProteinID:OQU81292	ProteinID:OQU81292.1	RefSeq:XP_002447597.1	SEG:seg	SUPFAM:SSF48371
UniParc:UPI0001A870C1	UniProt:A0A1Z5RC18	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:14403485..14404733

Molecular Weight (calculated)

23115.2 Da

IEP (calculated)

6.903

GRAVY (calculated)

0.147

Length

215 amino acids

Sequence
(BLAST)

001: MGLPMSSTLA RWARAAAARC ACYGDSGAQE RGSAPVSFFR ESEEAPGLSS RALDVLLDVV EQSRIGPTKA VEVGAVHVLV KLLANADDRH DAERILLLLK
101: CLCKCPEGRM ALSEHDLSVA AVAKTMLRVS ELATELAIKV LWLVSVVAPS EKVLEDMVLT GAVAGLLHVE SPPTTKQKTV RMMRINGVFW RQYTCFPTDL
201: RERSAAAAAG AGEEL

Best Arabidopsis Sequence Match ( AT3G52450.1 )
(BLAST)

001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA

Arabidopsis Description

PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.