Factsheet for GSMUA_Achr3P18060_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P13860_001	Banana	cytosol	42.26	53.14
EES11341	Sorghum	cytosol	52.49	48.54
Zm00001d026040_P001	Maize	cytosol	51.71	48.17
Os04t0589700-01	Rice	cytosol	53.02	47.98
Zm00001d002498_P001	Maize	cytosol	52.23	47.95
TraesCS2A01G450300.1	Wheat	cytosol	50.66	46.28
Solyc01g080920.2.1	Tomato	cytosol	49.61	46.21
PGSC0003DMT400004594	Potato	cytosol	49.34	46.19
TraesCS2B01G471900.1	Wheat	cytosol	50.66	46.17
TraesCS2D01G449900.1	Wheat	cytosol	50.39	45.93
Os02t0690600-01	Rice	cytosol	50.66	45.41
HORVU6Hr1G066870.1	Barley	cytosol	49.87	44.29
TraesCS6B01G290700.1	Wheat	cytosol	49.87	44.08
TraesCS6A01G263700.1	Wheat	cytosol	49.61	43.95
TraesCS6D01G251200.1	Wheat	cytosol	49.61	43.75
Zm00001d017671_P001	Maize	cytosol	48.56	43.53
EES07426	Sorghum	cytosol	48.56	43.12
OQU80253	Sorghum	mitochondrion	24.15	42.2
OQU81292	Sorghum	mitochondrion	22.83	40.47
GSMUA_Achr7P03220_001	Banana	cytosol	30.45	37.42
GSMUA_Achr5P01000_001	Banana	cytosol	32.81	35.21
GSMUA_Achr8P30400_001	Banana	cytosol	33.33	34.6
GSMUA_Achr10P...	Banana	cytosol	32.55	33.97
GSMUA_Achr11P...	Banana	cytosol	32.28	32.98
GSMUA_Achr11P...	Banana	cytosol	30.71	31.97
GSMUA_Achr6P02470_001	Banana	mitochondrion	27.82	27.89
GSMUA_Achr6P11310_001	Banana	cytosol	27.56	27.63
GSMUA_Achr1P16250_001	Banana	cytosol	29.4	27.52
GSMUA_Achr7P18640_001	Banana	mitochondrion	26.51	26.65
GSMUA_Achr10P...	Banana	cytosol	26.25	26.6
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	22.83	25.22
GSMUA_Achr11P...	Banana	mitochondrion	27.3	24.47
GSMUA_Achr8P30420_001	Banana	mitochondrion	17.32	24.18
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	25.2	24.12
GSMUA_Achr3P02030_001	Banana	plastid	24.67	22.43
GSMUA_Achr1P13220_001	Banana	cytosol	22.83	21.97
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	23.1	21.95
GSMUA_Achr3P25750_001	Banana	cytosol	24.67	21.91
GSMUA_Achr2P08620_001	Banana	cytosol	24.93	21.89
GSMUA_Achr8P04940_001	Banana	cytosol	24.67	21.76
GSMUA_Achr6P25670_001	Banana	cytosol	23.62	21.03
GSMUA_Achr6P18140_001	Banana	cytosol	22.31	20.78
GSMUA_Achr5P01020_001	Banana	cytosol	21.78	20.7
GSMUA_Achr4P07400_001	Banana	cytosol	23.36	20.51
GSMUA_Achr10P...	Banana	plastid	19.42	19.27
GSMUA_Achr9P29630_001	Banana	cytosol	31.23	19.26

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr3G18060_001	EnsemblPlants:GSMUA_Achr3P18060_001
EnsemblPlants:GSMUA_Achr3T18060_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0SFM2	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF23	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000294C585	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

Putative E3 ubiquitin-protein ligase PUB22 [Source:GMGC_GENE;Acc:GSMUA_Achr3G18060_001]

Coordinates

chr3:-:19473727..19474953

Molecular Weight (calculated)

42629.4 Da

IEP (calculated)

6.581

GRAVY (calculated)

0.045

Length

381 amino acids

Sequence
(BLAST)

001: MEAPFLFQCP ISLELMEDPV TIATGVTYER KNIEKWLFTY KKLTCPATMQ RLESFDLTPN HTVKRLISSF LEHAADEEPV TSPPCSYDAV DHDKLVSLLK
101: SIQTGPFKAS GLRKLKVLVE KNDELQKDLI RSGGIEVLGC VMSHVVVENS DFTAFRACEE ALGVLSLLPL SDDATVELIL KPDSLKPMMW ITKMVTDQDV
201: DIVKSLLDLL SDEISTKLSS SSLDVLLEIV ATSNKNRLKA IEAGAVCILL ELLPDASRHN CEKVLLLLKR LCECAEGRSA FADHGLGVAA VSKKIMRVSE
301: MATKLGVQIM WLMSSFHPRE KLLEEMMVFG TVRKLLALLH IDGRSSSTNE KAIKMMKLHG AVWRQYHCFP SELKDFLRLN H

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.