Factsheet for GSMUA_Achr2P20690_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

nucleus 2
extracellular 1
mitochondrion 1
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G076490.1	Barley	mitochondrion	12.72	58.62
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	55.61	56.03
TraesCS2D01G305400.1	Wheat	cytosol	54.36	54.5
TraesCS2B01G323600.1	Wheat	cytosol	54.11	54.25
TraesCS2A01G307000.1	Wheat	cytosol	51.12	52.97
Zm00001d003624_P001	Maize	cytosol	52.12	52.25
OQU81614	Sorghum	cytosol	51.62	52.01
Os04t0437300-01	Rice	cytosol	53.12	50.0
VIT_04s0044g01460.t01	Wine grape	cytosol	48.63	48.87
TraesCS7A01G399900.1	Wheat	extracellular, vacuole	42.39	44.39
TraesCS7B01G300000.1	Wheat	cytosol, extracellular, nucleus	42.14	44.01
KRH53906	Soybean	cytosol	43.14	43.91
KRH64033	Soybean	cytosol	42.89	43.77
TraesCS7D01G393700.1	Wheat	extracellular, vacuole	41.4	43.46
KRH40934	Soybean	cytosol	41.4	42.78
HORVU7Hr1G093780.1	Barley	cytosol, endoplasmic reticulum, extracellular	41.15	42.2
KRH59579	Soybean	cytosol	38.9	41.71
Solyc05g056500.1.1	Tomato	cytosol	40.15	40.15
PGSC0003DMT400060272	Potato	cytosol	39.9	39.6
GSMUA_Achr7P03220_001	Banana	cytosol	23.44	30.32
GSMUA_Achr5P01000_001	Banana	cytosol	26.68	30.14
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	25.44	29.57
GSMUA_Achr8P30420_001	Banana	mitochondrion	19.95	29.3
GSMUA_Achr10P...	Banana	cytosol	25.69	28.22
GSMUA_Achr6P11310_001	Banana	cytosol	26.18	27.63
GSMUA_Achr6P25670_001	Banana	cytosol	29.43	27.57
GSMUA_Achr1P13220_001	Banana	cytosol	27.18	27.53
GSMUA_Achr8P30400_001	Banana	cytosol	24.94	27.25
GSMUA_Achr6P02470_001	Banana	mitochondrion	25.19	26.58
GSMUA_Achr7P18640_001	Banana	mitochondrion	24.94	26.39
GSMUA_Achr10P...	Banana	cytosol	24.44	26.06
GSMUA_Achr11P...	Banana	cytosol	23.69	25.96
GSMUA_Achr11P...	Banana	mitochondrion	27.18	25.65
GSMUA_Achr11P...	Banana	cytosol	22.69	24.4
GSMUA_Achr3P25750_001	Banana	cytosol	25.44	23.78
GSMUA_Achr6P18140_001	Banana	cytosol	24.19	23.72
GSMUA_Achr5P01020_001	Banana	cytosol	23.69	23.69
GSMUA_Achr3P02030_001	Banana	plastid	24.19	23.15
GSMUA_Achr3P18060_001	Banana	cytosol	21.95	23.1
GSMUA_Achr4P07400_001	Banana	cytosol	24.94	23.04
GSMUA_Achr8P04940_001	Banana	cytosol	24.69	22.92
GSMUA_Achr1P16250_001	Banana	cytosol	22.94	22.6
GSMUA_Achr10P...	Banana	plastid	21.45	22.4
GSMUA_Achr2P08620_001	Banana	cytosol	23.44	21.66
GSMUA_Achr5P13860_001	Banana	cytosol	15.46	20.46
GSMUA_Achr9P29630_001	Banana	cytosol	25.19	16.34

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr2G20690_001	EnsemblPlants:GSMUA_Achr2P20690_001
EnsemblPlants:GSMUA_Achr2T20690_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0S9R0	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF103	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000296E131	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Putative U-box domain-containing protein 25 [Source:GMGC_GENE;Acc:GSMUA_Achr2G20690_001]

Coordinates

chr2:+:20462606..20463811

Molecular Weight (calculated)

42647.8 Da

IEP (calculated)

7.177

GRAVY (calculated)

0.187

Length

401 amino acids

Sequence
(BLAST)

001: MSIPHLFRCP ISLDLFTDPV TLSTGLTYDR PCIERWLADG NLTCPVTMQR LSDASLVPNH TLRHLIDQWL IAGAADFHCR TKPTRSVNDN ELSLAAVKQK
101: LQSPDIASAA KLQALDKVRA VAVESDIGQA CLIQLGFFPL LLQLLLRAPW PADSELIEVA LDCVLSFSPA SPLDSLNMLT DSSNLDSLML LLDQGSARIK
201: ISLCHLLEVI GTSGATQELS LIVGQSPRVL QALVFLAQNK PDGAASEAAV RAIAGLCSSE ATRRNAIREG AVDGIVSYLS SSAGKTDARA LAALELLLGH
301: EEGKRAAVRN PNAIPVLVKM VFKVPSDHKG GEHAVGSLLT VCCDSTPATT QAVDAGVVMQ LLLLLQSQCS SKAKAKARAL LKLVKSMWAA HAGGGQCNND
401: K

Best Arabidopsis Sequence Match ( AT1G49780.1 )
(BLAST)

001: MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F

Arabidopsis Description

PUB26U-box domain-containing protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA4]
SUBAcon: [cytoskeleton,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.