CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64033	Soybean	cytosol	96.19	96.44
KRH40934	Soybean	cytosol	70.56	71.65
KRH59579	Soybean	cytosol	66.75	70.32
VIT_04s0044g01460.t01	Wine grape	cytosol	59.14	58.4
Solyc05g056500.1.1	Tomato	cytosol	50.76	49.88
PGSC0003DMT400060272	Potato	cytosol	51.02	49.75
HORVU2Hr1G076490.1	Barley	mitochondrion	10.41	47.13
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	45.94	45.48
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	43.91	43.14
OQU81614	Sorghum	cytosol	41.88	41.46
Zm00001d003624_P001	Maize	cytosol	40.36	39.75
TraesCS2A01G307000.1	Wheat	cytosol	38.32	39.02
TraesCS2D01G305400.1	Wheat	cytosol	39.34	38.75
TraesCS2B01G323600.1	Wheat	cytosol	39.34	38.75
TraesCS7D01G393700.1	Wheat	extracellular, vacuole	36.55	37.7
TraesCS7A01G399900.1	Wheat	extracellular, vacuole	36.55	37.6
Os04t0437300-01	Rice	cytosol	40.36	37.32
HORVU7Hr1G093780.1	Barley	cytosol, endoplasmic reticulum, extracellular	36.55	36.83
TraesCS7B01G300000.1	Wheat	cytosol, extracellular, nucleus	34.77	35.68
KRH50316	Soybean	cytosol, plasma membrane, plastid	31.22	29.71
KRH70657	Soybean	cytosol	30.96	29.4
KRH55660	Soybean	cytosol	9.14	28.8
KRH26691	Soybean	cytosol	27.16	27.65
KRH22633	Soybean	cytosol, nucleus	27.41	26.8
KRH72180	Soybean	cytosol	15.48	26.29
KRH68013	Soybean	cytosol	19.29	25.68
KRH72176	Soybean	cytosol	25.89	24.4
KRH59546	Soybean	cytosol	25.63	24.16
KRH52124	Soybean	cytosol	25.89	24.0
KRH05554	Soybean	cytosol	25.38	23.87
KRH32856	Soybean	cytosol	25.38	23.81
KRH22634	Soybean	cytosol	25.38	23.7
KRG97963	Soybean	mitochondrion	25.89	23.67
KRH26690	Soybean	cytosol	25.63	23.65
KRH39018	Soybean	mitochondrion	26.14	23.52
KRH53869	Soybean	cytosol	24.87	23.5
KRH61438	Soybean	cytosol	25.13	23.46
KRH43397	Soybean	cytosol	24.87	23.45
KRH25324	Soybean	cytosol	21.57	23.42
KRH48691	Soybean	cytosol	25.89	23.34
KRG88755	Soybean	cytosol	25.13	23.02
KRH25323	Soybean	cytosol	23.6	23.02
KRH30918	Soybean	mitochondrion	25.38	22.99
KRH68014	Soybean	cytosol	24.37	22.86
KRG96257	Soybean	cytosol	23.6	22.2
KRG88869	Soybean	cytosol	23.35	22.06
KRH77156	Soybean	cytosol	25.13	22.05
KRG96268	Soybean	cytosol	23.35	21.96
KRH35744	Soybean	cytosol	22.84	21.48
KRH58142	Soybean	cytosol	24.11	21.4
KRH36899	Soybean	cytosol	20.05	21.29
KRH17309	Soybean	cytosol, mitochondrion	23.6	21.18
KRH72959	Soybean	cytosol, mitochondrion	23.35	21.0
KRH28330	Soybean	plastid	25.13	19.26
KRH08734	Soybean	mitochondrion	19.29	18.36
KRH70331	Soybean	mitochondrion	18.78	18.18

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100815247	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02003489	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_06G154100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	UniProt:I1KBK0	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:KRH53906
ProteinID:KRH53906	ProteinID:KRH53906.1	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF103
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000233A2E2	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:12565333..12566517

Molecular Weight (calculated)

43920.0 Da

IEP (calculated)

7.438

GRAVY (calculated)

0.103

Length

394 amino acids

Sequence
(BLAST)

001: MNEAQIEITI PHLFRCPISL DLFEDPVTLC TGQTYDRSSI EKWFSAGNLT CPVTMQKLHD PSIVPNHTLR HLINQWLQLG PQFGNSASID YLAALKHTLE
101: SPQLENKLQA LEKIRVLSDE YCSFRKSCFH QLNFLPLLLE LVFGTQLSKS HNMEFTELAL SCILKLLPLV SLEPLNMIKD ESKLATFLLL FEKGTSSVKT
201: SLCHLIDSTA SPQTEEVCHM LGHSHKLVHE IVVLVRQNCE VSKVVAIKAM LALCSLQSNR ENLVREGAID GAITYISGCE TRQKNAAPLA MAIIKKLLVL
301: DSAKEALVNH PNGVETLVKM VFRVCNQECS ESAVGILAIV CCDFGRAREE AIGAGVLTQL LFLLQSQCGT KTKTKARMLL KLLRSKWIEE PKQV

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.