Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7D01G393700.1 | Wheat | extracellular, vacuole | 89.26 | 91.36 |
TraesCS7A01G399900.1 | Wheat | extracellular, vacuole | 88.49 | 90.34 |
TraesCS7B01G300000.1 | Wheat | cytosol, extracellular, nucleus | 87.98 | 89.58 |
HORVU2Hr1G076490.1 | Barley | mitochondrion | 13.3 | 59.77 |
HORVU2Hr1G123130.1 | Barley | cytosol | 6.65 | 56.52 |
GSMUA_Achr7P23310_001 | Banana | cytosol, peroxisome, plastid | 43.99 | 43.22 |
GSMUA_Achr2P20690_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 42.2 | 41.15 |
VIT_04s0044g01460.t01 | Wine grape | cytosol | 39.9 | 39.1 |
KRH40934 | Soybean | cytosol | 36.83 | 37.11 |
KRH53906 | Soybean | cytosol | 36.83 | 36.55 |
KRH64033 | Soybean | cytosol | 36.32 | 36.13 |
KRH59579 | Soybean | cytosol | 34.53 | 36.1 |
Solyc05g056500.1.1 | Tomato | cytosol | 35.29 | 34.41 |
PGSC0003DMT400060272 | Potato | cytosol | 35.55 | 34.41 |
HORVU3Hr1G083500.1 | Barley | cytosol | 28.13 | 26.63 |
HORVU4Hr1G066070.1 | Barley | cytosol | 28.39 | 24.13 |
HORVU4Hr1G064070.1 | Barley | mitochondrion | 24.55 | 21.82 |
HORVU0Hr1G003810.1 | Barley | cytosol | 23.79 | 21.58 |
HORVU6Hr1G089560.1 | Barley | plastid | 24.55 | 21.29 |
HORVU6Hr1G089590.1 | Barley | plastid | 24.55 | 21.24 |
HORVU6Hr1G066870.1 | Barley | cytosol | 23.02 | 20.98 |
HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 23.02 | 20.79 |
HORVU1Hr1G074180.1 | Barley | mitochondrion, plastid | 24.04 | 20.75 |
HORVU2Hr1G074130.1 | Barley | plastid | 27.37 | 20.66 |
HORVU7Hr1G040790.2 | Barley | plastid | 25.58 | 20.49 |
HORVU2Hr1G123050.1 | Barley | cytosol | 17.14 | 19.94 |
HORVU6Hr1G077120.1 | Barley | plastid | 24.81 | 18.95 |
Protein Annotations
Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:HORVU7Hr1G093780 | EnsemblPlants:HORVU7Hr1G093780.1 |
InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | UniProt:M0Y6T2 | PFAM:PF04564 | PFscan:PS51698 |
PANTHER:PTHR22849 | PANTHER:PTHR22849:SF103 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI0002963841 |
InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:M0Y6T2]
Coordinates
chrchr7H:-:572254844..572256019
Molecular Weight (calculated)
41387.7 Da
IEP (calculated)
8.775
GRAVY (calculated)
0.301
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MLIPEVLVCP ISLDLMSDPV TLLPTGQTYD RPSIRRWLAA GHRTCPVTMR PLPHHTSGGS DQSALLAPNR TLKHLIDRWL LLADLALPTL RDNLLDVAAA
101: AAPESAPTVA AVETLRIIRS LSPPGFCALL LRLVTLRRSD DVLAELALGC LLASPSAREL ADALHEEKKL PSSFAFLLRQ GSPKVKTALC RLIHTVGAVA
201: VDAVVALGRS EPVMVALAAL VRDDTDGAAS EAALRAMWSL SSSDQASREA AVAAGAVDAL LSYISSGGSR RRSPSCAPWA LALETLELVL VSVDAGRQAM
301: YARPGATAVL VKMVFMVPSR QDRVGGGGSG SEHAMASLLV ACRESAEARV DAINAGLLTR LLLLLQSQCS PRAKANAMAL LKLLRAIWAR H
101: AAPESAPTVA AVETLRIIRS LSPPGFCALL LRLVTLRRSD DVLAELALGC LLASPSAREL ADALHEEKKL PSSFAFLLRQ GSPKVKTALC RLIHTVGAVA
201: VDAVVALGRS EPVMVALAAL VRDDTDGAAS EAALRAMWSL SSSDQASREA AVAAGAVDAL LSYISSGGSR RRSPSCAPWA LALETLELVL VSVDAGRQAM
301: YARPGATAVL VKMVFMVPSR QDRVGGGGSG SEHAMASLLV ACRESAEARV DAINAGLLTR LLLLLQSQCS PRAKANAMAL LKLLRAIWAR H
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.