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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, cytosol

Predictor Summary:
  • nucleus 2
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7D01G393700.1 Wheat extracellular, vacuole 89.26 91.36
TraesCS7A01G399900.1 Wheat extracellular, vacuole 88.49 90.34
TraesCS7B01G300000.1 Wheat cytosol, extracellular, nucleus 87.98 89.58
HORVU2Hr1G076490.1 Barley mitochondrion 13.3 59.77
HORVU2Hr1G123130.1 Barley cytosol 6.65 56.52
GSMUA_Achr7P23310_001 Banana cytosol, peroxisome, plastid 43.99 43.22
GSMUA_Achr2P20690_001 Banana endoplasmic reticulum, extracellular, plasma membrane 42.2 41.15
VIT_04s0044g01460.t01 Wine grape cytosol 39.9 39.1
KRH40934 Soybean cytosol 36.83 37.11
KRH53906 Soybean cytosol 36.83 36.55
KRH64033 Soybean cytosol 36.32 36.13
KRH59579 Soybean cytosol 34.53 36.1
Solyc05g056500.1.1 Tomato cytosol 35.29 34.41
PGSC0003DMT400060272 Potato cytosol 35.55 34.41
HORVU3Hr1G083500.1 Barley cytosol 28.13 26.63
HORVU4Hr1G066070.1 Barley cytosol 28.39 24.13
HORVU4Hr1G064070.1 Barley mitochondrion 24.55 21.82
HORVU0Hr1G003810.1 Barley cytosol 23.79 21.58
HORVU6Hr1G089560.1 Barley plastid 24.55 21.29
HORVU6Hr1G089590.1 Barley plastid 24.55 21.24
HORVU6Hr1G066870.1 Barley cytosol 23.02 20.98
HORVU6Hr1G034250.1 Barley cytosol, nucleus, peroxisome 23.02 20.79
HORVU1Hr1G074180.1 Barley mitochondrion, plastid 24.04 20.75
HORVU2Hr1G074130.1 Barley plastid 27.37 20.66
HORVU7Hr1G040790.2 Barley plastid 25.58 20.49
HORVU2Hr1G123050.1 Barley cytosol 17.14 19.94
HORVU6Hr1G077120.1 Barley plastid 24.81 18.95
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.2InterPro:ARM-likeInterPro:ARM-type_foldGO:GO:0003674
GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0006464GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:HORVU7Hr1G093780EnsemblPlants:HORVU7Hr1G093780.1
InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083UniProt:M0Y6T2PFAM:PF04564PFscan:PS51698
PANTHER:PTHR22849PANTHER:PTHR22849:SF103SMART:SM00504SUPFAM:SSF48371SUPFAM:SSF57850UniParc:UPI0002963841
InterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg:::
Description
RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:M0Y6T2]
Coordinates
chrchr7H:-:572254844..572256019
Molecular Weight (calculated)
41387.7 Da
IEP (calculated)
8.775
GRAVY (calculated)
0.301
Length
391 amino acids
Sequence
(BLAST)
001: MLIPEVLVCP ISLDLMSDPV TLLPTGQTYD RPSIRRWLAA GHRTCPVTMR PLPHHTSGGS DQSALLAPNR TLKHLIDRWL LLADLALPTL RDNLLDVAAA
101: AAPESAPTVA AVETLRIIRS LSPPGFCALL LRLVTLRRSD DVLAELALGC LLASPSAREL ADALHEEKKL PSSFAFLLRQ GSPKVKTALC RLIHTVGAVA
201: VDAVVALGRS EPVMVALAAL VRDDTDGAAS EAALRAMWSL SSSDQASREA AVAAGAVDAL LSYISSGGSR RRSPSCAPWA LALETLELVL VSVDAGRQAM
301: YARPGATAVL VKMVFMVPSR QDRVGGGGSG SEHAMASLLV ACRESAEARV DAINAGLLTR LLLLLQSQCS PRAKANAMAL LKLLRAIWAR H
Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.