Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G070390.1 | golgi |
| HORVU3Hr1G088110.3 | golgi |
| HORVU6Hr1G077710.3 | |
| HORVU7Hr1G036470.3 | |
| HORVU7Hr1G036500.7 | |
| HORVU7Hr1G036540.3 | |
| HORVU7Hr1G036570.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G601300.1 | Wheat | cytosol | 88.39 | 69.56 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 88.1 | 69.32 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 87.2 | 68.62 |
| Os04t0686000-01 | Rice | cytosol | 58.33 | 47.46 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 55.06 | 47.19 |
| EES13136 | Sorghum | cytosol | 58.93 | 46.48 |
| PGSC0003DMT400055045 | Potato | cytosol | 22.02 | 35.07 |
| Solyc01g007030.2.1 | Tomato | cytosol | 21.73 | 34.6 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 40.77 | 33.17 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 33.33 | 31.55 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 28.57 | 30.97 |
| KRH26691 | Soybean | cytosol | 34.52 | 29.97 |
| KRH22633 | Soybean | cytosol, nucleus | 35.42 | 29.53 |
| KRH25324 | Soybean | cytosol | 31.25 | 28.93 |
| PGSC0003DMT400054947 | Potato | cytosol | 25.89 | 28.81 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 36.9 | 28.77 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 34.52 | 28.22 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 34.23 | 27.98 |
| PGSC0003DMT400055050 | Potato | cytosol | 32.44 | 27.81 |
| PGSC0003DMT400055051 | Potato | cytosol | 32.14 | 27.41 |
| HORVU6Hr1G089560.1 | Barley | plastid | 36.31 | 27.05 |
| HORVU6Hr1G089590.1 | Barley | plastid | 36.31 | 26.99 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 32.44 | 26.65 |
| Bra005309.1-P | Field mustard | cytosol | 30.65 | 26.61 |
| CDX84168 | Canola | cytosol | 31.85 | 26.35 |
| CDY32070 | Canola | cytosol | 32.14 | 26.21 |
| CDX84587 | Canola | cytosol | 31.85 | 26.16 |
| Bra023044.1-P | Field mustard | cytosol | 31.85 | 26.16 |
| PGSC0003DMT400054949 | Potato | cytosol | 31.55 | 26.11 |
| CDY40422 | Canola | cytosol | 31.85 | 25.97 |
| Bra017278.1-P | Field mustard | cytosol | 31.85 | 25.97 |
| KRH32856 | Soybean | cytosol | 32.44 | 25.95 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 31.25 | 25.86 |
| CDX79645 | Canola | cytosol | 31.25 | 25.74 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 31.55 | 25.6 |
| AT2G35930.1 | Thale cress | cytosol | 31.25 | 25.55 |
| CDX75084 | Canola | cytosol | 30.65 | 25.37 |
| KRH72176 | Soybean | cytosol | 31.55 | 25.36 |
| Solyc11g068920.1.1 | Tomato | cytosol | 30.36 | 25.25 |
| Solyc01g007020.2.1 | Tomato | cytosol | 30.65 | 25.25 |
| CDX95337 | Canola | cytosol | 30.65 | 25.18 |
| Solyc01g007010.2.1 | Tomato | cytosol | 30.36 | 25.0 |
| PGSC0003DMT400050493 | Potato | cytosol | 30.06 | 25.0 |
| KRH35744 | Soybean | cytosol | 30.95 | 24.82 |
| CDX78096 | Canola | cytosol | 28.57 | 24.68 |
| KRG96257 | Soybean | cytosol | 30.65 | 24.58 |
| KRH68014 | Soybean | cytosol | 30.65 | 24.52 |
| CDY59599 | Canola | cytosol | 29.76 | 24.45 |
| Solyc01g009330.1.1 | Tomato | cytosol | 30.95 | 24.41 |
| KRG96268 | Soybean | cytosol | 30.36 | 24.34 |
| CDY23218 | Canola | cytosol | 28.57 | 24.24 |
| PGSC0003DMT400054948 | Potato | cytosol | 20.54 | 24.21 |
| Bra012803.1-P | Field mustard | cytosol | 30.36 | 24.11 |
| Bra033430.1-P | Field mustard | cytosol | 29.46 | 23.35 |
| AT3G52450.1 | Thale cress | cytosol | 30.06 | 23.22 |
| Bra006925.1-P | Field mustard | cytosol | 29.76 | 22.99 |
| PGSC0003DMT400038197 | Potato | cytosol | 30.65 | 22.69 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 29.17 | 22.63 |
| HORVU6Hr1G066870.1 | Barley | cytosol | 24.7 | 19.35 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 32.44 | 17.64 |
| HORVU2Hr1G076490.1 | Barley | mitochondrion | 4.46 | 17.24 |
| HORVU7Hr1G093780.1 | Barley | cytosol, endoplasmic reticulum, extracellular | 19.94 | 17.14 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 8.63 | 16.2 |
| HORVU7Hr1G040790.2 | Barley | plastid | 23.51 | 16.19 |
| HORVU4Hr1G064070.1 | Barley | mitochondrion | 19.64 | 15.0 |
| HORVU4Hr1G066070.1 | Barley | cytosol | 20.24 | 14.78 |
| HORVU2Hr1G074130.1 | Barley | plastid | 22.32 | 14.48 |
| HORVU1Hr1G074180.1 | Barley | mitochondrion, plastid | 19.05 | 14.13 |
| HORVU6Hr1G077120.1 | Barley | plastid | 21.43 | 14.06 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | UniProt:A0A287JRD1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:HORVU2Hr1G123050 | EnsemblPlants:HORVU2Hr1G123050.1 | InterPro:IPR003613 | PFscan:PS51698 |
| PANTHER:PTHR22849 | PANTHER:PTHR22849:SF11 | SUPFAM:SSF48371 | UniParc:UPI000B485915 | InterPro:Ubox_domain | SEG:seg |
Description
RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287JRD1]
Coordinates
chrchr2H:+:754613729..754614738
Molecular Weight (calculated)
34633.7 Da
IEP (calculated)
8.514
GRAVY (calculated)
0.250
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: TKLPVAPDCE PTPNHTLSRL IRSWCALHRP DDAVDHTTQS APADRAHLAT LVSWLADIKN KPRSSQEALA ALRELRDVAV EGERGRELVA ALPGAPDALL
101: QVFVASATCA PENAAAALDV VSSLRLPERF LARAIERDGA ALVGALVYTL HEHSGSGSDA ASRARAAVLL ADVTACMAPS RAASLPEQVF VETVRLLRGD
201: DTMGASASMA TKAALRVLAG ATAHGRNRVK AAEAGAVAAL VDLLLLVNRD RRRAWCELAL CALNRLCGCA EGRAALVAHG AGVAAVGAWV AGTSMAASAK
301: AVRVLRSIAR HAATGAVVQE MAATGAVGKL CVVAAS
101: QVFVASATCA PENAAAALDV VSSLRLPERF LARAIERDGA ALVGALVYTL HEHSGSGSDA ASRARAAVLL ADVTACMAPS RAASLPEQVF VETVRLLRGD
201: DTMGASASMA TKAALRVLAG ATAHGRNRVK AAEAGAVAAL VDLLLLVNRD RRRAWCELAL CALNRLCGCA EGRAALVAHG AGVAAVGAWV AGTSMAASAK
301: AVRVLRSIAR HAATGAVVQE MAATGAVGKL CVVAAS
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.